Transcript: Human NM_001135111.2

Homo sapiens potassium two pore domain channel subfamily K member 17 (KCNK17), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
KCNK17 (89822)
Length:
1675
CDS:
100..915

Additional Resources:

NCBI RefSeq record:
NM_001135111.2
NBCI Gene record:
KCNK17 (89822)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001135111.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043857 GATGTCGTCCAAGCATACAAA pLKO.1 337 CDS 100% 5.625 7.875 N KCNK17 n/a
2 TRCN0000043856 CCCATGGGAATCATACAGCAT pLKO.1 1184 3UTR 100% 2.640 2.112 N KCNK17 n/a
3 TRCN0000043855 CGCCTCTTCTGCATCTTCTTT pLKO.1 487 CDS 100% 5.625 3.375 N KCNK17 n/a
4 TRCN0000043853 CCACAGCTCTAAGGAAGACTT pLKO.1 1084 3UTR 100% 4.950 2.970 N KCNK17 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001135111.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14331 pDONR223 100% 75.4% 69.7% None (many diffs) n/a
2 ccsbBroad304_14331 pLX_304 0% 75.4% 69.7% V5 (not translated due to frame shift) (many diffs) n/a
3 TRCN0000469578 AGCAGCATCACTATAGTGAGTGCT pLX_317 26.5% 75.4% 69.7% V5 (not translated due to frame shift) (many diffs) n/a
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