Transcript: Human NM_001136049.2

Homo sapiens leishmanolysin like peptidase (LMLN), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-04
Taxon:
Homo sapiens (human)
Gene:
LMLN (89782)
Length:
7154
CDS:
23..2101

Additional Resources:

NCBI RefSeq record:
NM_001136049.2
NBCI Gene record:
LMLN (89782)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001136049.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417477 CTCATTCCGTTTGTCTAATTC pLKO_005 1695 CDS 100% 13.200 18.480 N LMLN n/a
2 TRCN0000050470 GCGGATGCTATCAGGTTTCTT pLKO.1 1776 CDS 100% 5.625 7.875 N LMLN n/a
3 TRCN0000422661 CAACCTATGCAGATGGTAGAA pLKO_005 2178 3UTR 100% 4.950 6.930 N LMLN n/a
4 TRCN0000414349 TGACGACCATCAGACCTTGAA pLKO_005 2229 3UTR 100% 4.950 6.930 N LMLN n/a
5 TRCN0000050471 GCAGAAGATTTGCCTTATTAT pLKO.1 1526 CDS 100% 15.000 10.500 N LMLN n/a
6 TRCN0000423628 TCGAATCACTCTGGCATTAAT pLKO_005 1222 CDS 100% 15.000 10.500 N LMLN n/a
7 TRCN0000435210 AGCAGACAATGTGCAACAAAC pLKO_005 449 CDS 100% 10.800 7.560 N LMLN n/a
8 TRCN0000050472 CCACAGTGAAACATGAGGTTA pLKO.1 825 CDS 100% 4.950 3.465 N LMLN n/a
9 TRCN0000050468 CGTGTGTAATTTGCAGAAGTT pLKO.1 1450 CDS 100% 4.950 3.465 N LMLN n/a
10 TRCN0000050469 GCAGACTTTGTTCTTTACGTT pLKO.1 647 CDS 100% 3.000 2.100 N LMLN n/a
11 TRCN0000424225 TGCTAACCTGTGTCCAAATAT pLKO_005 766 CDS 100% 15.000 9.000 N LMLN n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001136049.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488044 ACCAAGTACCCACTTCCCCATGTA pLX_317 17% 94.6% 94.5% V5 1233_1343del;2076_2077insG n/a
Download CSV