Transcript: Human NM_001141979.3

Homo sapiens tumor protein p53 binding protein 1 (TP53BP1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TP53BP1 (7158)
Length:
10363
CDS:
114..6041

Additional Resources:

NCBI RefSeq record:
NM_001141979.3
NBCI Gene record:
TP53BP1 (7158)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001141979.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000018868 CCCATAACAAAGATATTGCTT pLKO.1 5842 CDS 100% 3.000 4.200 N TP53BP1 n/a
2 TRCN0000218999 GATACTCCTTGCCTGATAATT pLKO_005 174 CDS 100% 15.000 10.500 N TP53BP1 n/a
3 TRCN0000229638 AGAACGAGGAGACGGTAATAG pLKO_005 341 CDS 100% 13.200 9.240 N TP53BP1 n/a
4 TRCN0000229639 CAGTACTCCTATTGGTATTAG pLKO_005 2936 CDS 100% 13.200 9.240 N TP53BP1 n/a
5 TRCN0000218980 GATGCTAATACTGCAATTAAG pLKO_005 759 CDS 100% 13.200 9.240 N TP53BP1 n/a
6 TRCN0000018866 CCAGTGTGATTAGTATTGATT pLKO.1 2287 CDS 100% 5.625 3.938 N TP53BP1 n/a
7 TRCN0000018869 CCCTTGTTCAGGACAGTCTTT pLKO.1 1174 CDS 100% 4.950 3.465 N TP53BP1 n/a
8 TRCN0000018865 GATACTTGGTCTTACTGGTTT pLKO.1 6043 3UTR 100% 4.950 3.465 N TP53BP1 n/a
9 TRCN0000229640 GATACTTGGTCTTACTGGTTT pLKO_005 6043 3UTR 100% 4.950 3.465 N TP53BP1 n/a
10 TRCN0000018867 CCTCTCAACAAGACCTTGTTT pLKO.1 5289 CDS 100% 0.563 0.394 N TP53BP1 n/a
11 TRCN0000081779 CCTCCTTTCAACAAGCAGTAT pLKO.1 5427 CDS 100% 4.950 2.970 N Trp53bp1 n/a
12 TRCN0000321586 TGCCTAAAGAAGGTGATATTA pLKO_005 2851 CDS 100% 15.000 12.000 N Trp53bp1 n/a
13 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 7624 3UTR 100% 5.625 2.813 Y KLHL30 n/a
14 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 7624 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001141979.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000465716 CCCGCTAGCACTCTAGGATCTGGA pLX_317 5.5% 99.5% .4% V5 (not translated due to prior stop codon) (many diffs) n/a
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