Construct: ORF TRCN0000465716

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016884.1_s317c1
Derived from:
BRDN0000395120
DNA Barcode:
CCCGCTAGCACTCTAGGATCTGGA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TP53BP1 (7158)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465716
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7158 TP53BP1 tumor protein p53 binding p... NM_005657.4 99.8% .4% (many diffs)
2 human 7158 TP53BP1 tumor protein p53 binding p... NM_001141980.3 99.6% .4% (many diffs)
3 human 7158 TP53BP1 tumor protein p53 binding p... NM_001141979.3 99.5% .4% (many diffs)
4 human 7158 TP53BP1 tumor protein p53 binding p... XM_011521985.2 97.1% .4% (many diffs)
5 human 7158 TP53BP1 tumor protein p53 binding p... XM_011521986.3 85.4% .4% (many diffs)
6 human 7158 TP53BP1 tumor protein p53 binding p... XR_931899.2 62% (many diffs)
7 human 7158 TP53BP1 tumor protein p53 binding p... XR_001751382.2 56.1% (many diffs)
8 human 7158 TP53BP1 tumor protein p53 binding p... NM_001355001.2 51.5% .6% 0_1ins2864;2397_2397delTinsAC;2403A>T
9 mouse 27223 Trp53bp1 transformation related prot... XM_006499662.3 83.4% .4% (many diffs)
10 mouse 27223 Trp53bp1 transformation related prot... NM_013735.4 83.2% .4% (many diffs)
11 mouse 27223 Trp53bp1 transformation related prot... XM_011239581.2 83.2% .4% (many diffs)
12 mouse 27223 Trp53bp1 transformation related prot... XM_006499661.3 83.2% .4% (many diffs)
13 mouse 27223 Trp53bp1 transformation related prot... XM_011239582.2 82% .4% (many diffs)
14 mouse 27223 Trp53bp1 transformation related prot... XM_011239583.2 81.3% .4% (many diffs)
15 mouse 27223 Trp53bp1 transformation related prot... XM_017318936.1 81.2% .4% (many diffs)
16 mouse 27223 Trp53bp1 transformation related prot... NM_001290830.1 80.9% .4% (many diffs)
17 mouse 27223 Trp53bp1 transformation related prot... XM_011239584.2 80.9% .4% (many diffs)
18 mouse 27223 Trp53bp1 transformation related prot... XM_006499666.3 74.4% .1% (many diffs)
19 mouse 27223 Trp53bp1 transformation related prot... XM_017318938.1 72.4% .1% (many diffs)
20 mouse 27223 Trp53bp1 transformation related prot... XM_006499667.3 67.4% .1% (many diffs)
21 mouse 27223 Trp53bp1 transformation related prot... XM_006499668.3 44.4% .7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
126
ORF length:
57
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggaccctact ggaagcagtg agattcagat ttctctcagc aagatactcc
121ttgcctgata attgaagatt ctcagcctga aagccaggtt ctagaggatg attctggttc
181tcacttcagt atgctatctc gacaccttcc taatctccag acgcacaaag aaaatcctgt
241gttggatgtt gtgtccaatc ctgaacaaac agctggagaa gaacgaggag acggtaatag
301tgggttcaat gaacatttga aagaaaacaa ggttgcagac cctgtggatt cttctaactt
361ggacacatgt ggttccatca gtcaggtcat tgagcagtta cctcagccaa acaggacaag
421cagtgttctg ggaatgtcag tggaatctgc tcctgctgtg gaggaagaga agggagaaga
481gttggaacag aaggagaaag agaaggaaga agatacttca ggcaatacta cacattccct
541tggtgctgaa gatactgcct catcacagtt gggttttggg gttctggaac tctcccagag
601ccaggatgtt gaggaaaata ctgtgccata tgaagtggac aaagagcagc tacaatcagt
661aaccaccaac tctggttata ccaggctgtc tgatgtggat gctaatactg caattaagca
721tgaagaacag tccaacgaag atatccccat agcagaacag tccagcaagg acatccctgt
781gacagcacag cccagtaagg atgtacatgt tgtaaaagag caaaatccac cacctgcaag
841gtcagaggac atgcctttta gccccaaagc atctgttgct gctatggaag caaaagaaca
901gttgtctgca caagaactta tggaaagtgg actgcagatt cagaagtcac cagagcctga
961ggttttgtca actcaggaag acttgtttga ccagagcaat aaaacagtat cttctgatgg
1021ttgctctact ccttcaaggg aggaaggtgg gtgttctttg gcttccactc ctgccaccac
1081tctgcatctc ctgcagctct ctggtcagag gtcccttgtt caggacagtc tttccacgaa
1141ttcttcagat cttgttgctc cttctcctga tgctttccga tctactcctt ttatcgttcc
1201tagcagtccc acagagcaag aagggagaca agataagcca atggacacgt cagtgttatc
1261tgaagaagga ggagagcctt ttcagaagaa acttcaaagt ggtgaaccag tggagttaga
1321aaacccccct ctcctgcctg agtccactgt atcaccacaa gcctcaacac caatatctca
1381gagcacacca gtcttccctc ctgggtcact tcctatccca tcccagcctc agttttctca
1441tgacattttt attccttccc caagtctgga agaacaatca aatgatggga agaaagatgg
1501agatatgcat agttcatctt tgacagttga gtgttctaaa acttcagaga ttgaaccaaa
1561gaattcccct gaggatcttg ggctatcttt gacaggggat tcttgcaagt tgatgctttc
1621tacaagtgaa tatagtcagt ccccaaagat ggagagcttg agttctcaca gaattgatga
1681agatggagaa aacacacaga ttgaggatac ggaacccatg tctccagttc tcaattctaa
1741atttgttcct gctgaaaatg atagtatcct gatgaatcca gcacaggatg gtgaagtaca
1801actgagtcag aatgatgaca aaacaaaggg agatgataca gacaccaggg atgacattag
1861tattttagcc actggttgca agggcagaga agaaacggta gcagaagatg tttgtattga
1921tctcacttgt gattcgggga gtcaggcagt tccgtcacca gctactcgat ctgaggcact
1981ttctagtgtg ttagatcagg aggaagctat ggaaattaaa gaacaccatc cagaggaggg
2041gtcttcaggg tctgaggtgg aagaaatccc tgagacacct tgtgaaagtc aaggagagga
2101actcaaagaa gaaaatatgg agagtgttcc gttgcacctt tctctgactg aaactcagtc
2161ccaagggttg tgtcttcaaa aggaaatgcc aaaaaaagaa tgctcagaag ctatggaagt
2221tgaaaccagt gtgattagta ttgattcccc tcaaaagttg gcaatacttg accaagaatt
2281ggaacataag gaacaggaag cttgggaaga agctacttca gaggactcca gtgttgtcat
2341tgtagatgtg aaagagccat ctcccagagt tgatgtttct tgtgaacctt tggagggagt
2401ggagaagtgc tcagattccc agtcatggga ggatattgct ccagaaatag aaccatgtgc
2461tgagaataga ttagacacca aggaagaaaa gagtgtagaa tatgaaggag atctgaaatc
2521agggactgca gaaacagaac ctgtagagca agattcttca cagccttcct tacctttagt
2581gagagcagat gatcctttaa gacttgacca ggagttgcag cagccccaaa ctcaggagaa
2641aacaagtaat tcattaacag aagactcaaa aatggctaat gcaaagcagc taagctcaga
2701tgcagaggcc cagaagctgg ggaagccctc tgcccatgcc tcacaaagct tctgtgaaag
2761ttctagtgaa accccatttc atttcacttt gcctaaagaa ggtgatatca tcccaccatt
2821gactggtgca accccacctc ttattgggca cctaaaattg gagcccaaga gacacagtac
2881tcctattggt attagcaact atccagaaag caccatagca accagtgatg tcatgtctga
2941aagcatggtg gagacccatg atcccatact tgggagtgga aaaggggatt ctggggctgc
3001cccagacgtg gatgataaat tatgtctaag aatgaaactg gttagtcctg agactgaggc
3061gagtgaagag tctttgcagt tcaacctgga aaagcctgca actggtgaaa gaaaaaatgg
3121atctactgct gttgctgagt ctgttgccag tccccagaag accatgtctg tgttgagctg
3181tatctgtgaa gccaggcaag agaatgaggc tcgaagtgag gatcccccca ccacacccat
3241cagggggaac ttgctccact ttccaagttc tcaaggagaa gaggagaaag aaaaattgga
3301gggtgaccat acaatcaggc agagtcaaca gcctatgaag cccattagtc ctgtcaagga
3361ccctgtttct cctgcttccc agaagatggt catacaaggg ccatccagtc ctcaaggaga
3421ggcaatggtg acagatgtgc tagaagacca gaaagaagga cggagtacta ataaggaaaa
3481tcctagtaag gccttgattg aaaggcccag ccaaaataac ataggaatcc aaaccatgga
3541gtgttccttg agggtcccag aaactgtttc agcagcaacc cagactataa agaatgtgtg
3601tgagcagggg accagtacag tggaccagaa ctttggaaag caagatgcca cagttcagac
3661tgagaggggg agtggtgaga aaccagtcag tgctcctggg gatgatacag agtcgctcca
3721tagccaggga gaagaagagt ttgatatgcc tcagcctcca catggccatg tcttacatcg
3781tcacatgaga acaatccggg aagtacgcac acttgtcact cgtgtcatta cagatgtgta
3841ttatgtggat ggaacagaag tagaaagaaa agtaactgag gagactgaag agccaattgt
3901agagtgtcag gagtgtgaaa ctgaagtttc cccttcacag actgggggct cctcaggtga
3961cctgggggat atcagctcct tctcctccaa ggcatccagc ttacaccgca catcaagtgg
4021gacaagtctc tcagctatgc acagcagtgg aagctcaggg aaaggagccg gaccactcag
4081agggaaaacc agcgggacag aacccgcaga ttttgcctta cccagctccc gaggaggccc
4141aggaaaactg agtcctagaa aaggggtcag tcagacaggg acgccagtgt gtgaggagga
4201tggtgatgca ggccttggca tcagacaggg agggaaggct ccagtcacgc ctcgtgggcg
4261tgggcgaagg ggccgcccac cttctcggac cactggaacc agagaaacag ctgtgcctgg
4321ccccttgggc atagaggaca tttcacctaa cttgtcacca gatgataaat ccttcagccg
4381tgtcgtgccc cgagtgccag actccaccag acgaacagat gtgggtgctg gtgctttgcg
4441tcgtagtgac tctccagaaa ttcctttcca ggctgctgct ggcccttctg atggcttaga
4501tgcctcctct ccaggaaata gctttgtagg gctccgtgtt gtagccaagt ggtcatccaa
4561tggctacttt tactctggga aaatcacacg agatgtcgga gctgggaagt ataaattgct
4621ctttgatgat gggtacgaat gtgatgtgtt gggcaaagac attctgttat gtgaccccat
4681cccgctggac actgaagtga cggccctctc ggaggatgag tatttcagtg caggagtggt
4741gaaaggacat aggaaggagt ctggggaact gtactacagc attgaaaaag aaggccaaag
4801aaagtggtat aagcgaatgg ctgtcatcct gtccttggag caaggaaaca gactgagaga
4861gcagtatggg cttggcccct atgaagcagt aacacctctt acaaaggcag cagatatcag
4921cttagacaat ttggtggaag ggaagcggaa acggcgcagt aacgtcagct ccccagccac
4981ccctactgcc tccagtagca gcagcacaac ccctacccga aagatcacag aaagtcctcg
5041tgcctccatg ggagttctct caggcaaaag aaaacttatc acttctgaag aggaacggtc
5101ccctgccaag cgaggtcgca agtctgccac agtaaaacct ggtgcagtag gggcaggaga
5161gtttgtgagc ccctgtgaga gtggagacaa caccggtgaa ccctctgccc tggaagagca
5221gagagggcct ttgcctctca acaagacctt gtttctgggc tacgcatttc tccttaccat
5281ggccacaacc agtgacaagt tggccagccg ctccaaactg ccagatggac cctactggaa
5341gcagtgaaga agaggaggaa tttttggaaa ttcctccttt caacaagcag tatacagaat
5401cccagcttcg agcaggagct ggctatatcc ttgaagattt caatgaagcc cagtgtaaca
5461cagcttacca gtgtcttcta attgcggatc agcattgtcg aacccggaag tacttcctgt
5521gccttgccag tgggattcct tgtgtgtctc atgtctgggt ccatgatagt tgccatgcca
5581accagctcca gaactaccgt aattatctgt tgccagctgg gtacagcctt gaggagcaaa
5641gaattctgga ctggcaaccc cgtgaaaaTC CTTTCCAGAA TCTGAAGGTA CTCTTGGTAT
5701CAGACCAACA GCAGAACTTC CTGGAGCTCT GGTCTGAGAT CCTCATGACT GGTGGTGCAG
5761CCTCTGTGAA GCAGCACCAT TCAAGTGCCC ATAACAAAGA TATTGCTTTA GGGGTATTTG
5821ATGTGGTGGT GACGGACCCC TCATGCCCAG CCTCGGTGCT GAAGTGTGCT GAAGCATTGC
5881AGCTGCCTGT GGTGTCACAA GAGTGGGTGA TCCAGTGCCT CATTGTTGGG GAGAGAATTG
5941GATTCAAGCA GCATCCAAAA TATAAACACG ATTATGTTTC TCACTTGCCA ACTTTCTTGT
6001ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
6061AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
6121GAAAGGACGA CCCGCTAGCA CTCTAGGATC TGGAACGCGT TAAGTCgaca atcaacctct
6181ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)