Transcript: Human NM_001142271.2

Homo sapiens dehydrogenase/reductase 9 (DHRS9), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
DHRS9 (10170)
Length:
1465
CDS:
106..1065

Additional Resources:

NCBI RefSeq record:
NM_001142271.2
NBCI Gene record:
DHRS9 (10170)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001142271.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000229371 TCATCAGTGTGACACTAAATA pLKO_005 527 CDS 100% 15.000 21.000 N DHRS9 n/a
2 TRCN0000229372 GGCTATGAAATTGGCCGATTT pLKO_005 1093 3UTR 100% 10.800 15.120 N DHRS9 n/a
3 TRCN0000220330 CCACGCTCTAACAAGTCTCTT pLKO.1 912 CDS 100% 4.950 6.930 N DHRS9 n/a
4 TRCN0000220334 CCAGCAGCTTTGCAAGACTTT pLKO.1 997 CDS 100% 4.950 3.960 N DHRS9 n/a
5 TRCN0000219051 GCAGATCCAGTAAAGGTAATT pLKO_005 745 CDS 100% 13.200 9.240 N DHRS9 n/a
6 TRCN0000229370 AGGACTACAGAGAACCTATTG pLKO_005 488 CDS 100% 10.800 7.560 N DHRS9 n/a
7 TRCN0000220331 CCTATTGAAGTGAACCTGTTT pLKO.1 502 CDS 100% 4.950 3.465 N DHRS9 n/a
8 TRCN0000220333 CCTTTGGTCAAGAAAGCTCAA pLKO.1 553 CDS 100% 4.050 2.835 N DHRS9 n/a
9 TRCN0000220332 CCATCCAAATATGCAGTGGAA pLKO.1 637 CDS 100% 2.640 1.848 N DHRS9 n/a
10 TRCN0000218688 GGCTATACTCCATCCAAATAT pLKO_005 628 CDS 100% 15.000 9.000 N DHRS9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001142271.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02338 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02338 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473033 TTTTATATCTCACATAGTTCCGAT pLX_317 45.5% 100% 100% V5 n/a
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