Transcript: Mouse NM_001145826.1

Mus musculus sperm antigen with calponin homology and coiled-coil domains 1-like (Specc1l), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Specc1l (74392)
Length:
6307
CDS:
363..3770

Additional Resources:

NCBI RefSeq record:
NM_001145826.1
NBCI Gene record:
Specc1l (74392)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001145826.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000440242 AGAAGAGATCGGTGATCTAAA pLKO_005 2720 CDS 100% 13.200 18.480 N Specc1l n/a
2 TRCN0000112962 CCAGTTCTACTAGAGAAAGAT pLKO.1 769 CDS 100% 5.625 7.875 N Specc1l n/a
3 TRCN0000112964 GCTGCATGACAACCTCATTAT pLKO.1 2528 CDS 100% 13.200 10.560 N Specc1l n/a
4 TRCN0000440502 TAGGTGTGCAGCAGCATTTAA pLKO_005 1945 CDS 100% 15.000 10.500 N Specc1l n/a
5 TRCN0000443289 GACGCTGGACATCAATGAAAT pLKO_005 3674 CDS 100% 13.200 9.240 N Specc1l n/a
6 TRCN0000452564 TAGAGCAAAGGCTGGACAATT pLKO_005 1249 CDS 100% 13.200 9.240 N Specc1l n/a
7 TRCN0000447809 TGGAGTGCAAACAGCATAAAG pLKO_005 4017 3UTR 100% 13.200 9.240 N Specc1l n/a
8 TRCN0000447446 CCATTAGCTAGAACTCCTAAA pLKO_005 3830 3UTR 100% 10.800 7.560 N Specc1l n/a
9 TRCN0000447715 GTCATAGATGAAGACGTAAAG pLKO_005 1848 CDS 100% 10.800 7.560 N Specc1l n/a
10 TRCN0000112963 CCAGCCCACATACCATATCAA pLKO.1 3579 CDS 100% 5.625 3.938 N Specc1l n/a
11 TRCN0000112961 GCTGAGTTGTATTCTATCCAT pLKO.1 2187 CDS 100% 3.000 2.100 N Specc1l n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001145826.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07875 pDONR223 100% 87% 93.8% None (many diffs) n/a
2 ccsbBroad304_07875 pLX_304 0% 87% 93.8% V5 (many diffs) n/a
3 TRCN0000476672 AGTGTACCACCTCGAAGCACATGT pLX_317 12.5% 87% 93.8% V5 (many diffs) n/a
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