Transcript: Mouse NM_001160017.1

Mus musculus guanine nucleotide binding protein (G protein), beta 1 (Gnb1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Mus musculus (mouse)
Gene:
Gnb1 (14688)
Length:
3091
CDS:
261..1283

Additional Resources:

NCBI RefSeq record:
NM_001160017.1
NBCI Gene record:
Gnb1 (14688)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001160017.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034433 CCAAATTAGAGATGCTCGTAA pLKO.1 308 CDS 100% 4.950 6.930 N Gnb1 n/a
2 TRCN0000301619 CCAAATTAGAGATGCTCGTAA pLKO_005 308 CDS 100% 4.950 6.930 N Gnb1 n/a
3 TRCN0000034430 CGACTCTTTCTCAGATCACAA pLKO.1 343 CDS 100% 4.950 6.930 N Gnb1 n/a
4 TRCN0000301618 CGACTCTTTCTCAGATCACAA pLKO_005 343 CDS 100% 4.950 6.930 N Gnb1 n/a
5 TRCN0000034431 CCTACTCCCATGACAACATTA pLKO.1 1048 CDS 100% 13.200 9.240 N Gnb1 n/a
6 TRCN0000301616 CCTACTCCCATGACAACATTA pLKO_005 1048 CDS 100% 13.200 9.240 N Gnb1 n/a
7 TRCN0000034429 GCTGAAACCAAGAGCACAATT pLKO.1 1441 3UTR 100% 13.200 9.240 N Gnb1 n/a
8 TRCN0000301615 GCTGAAACCAAGAGCACAATT pLKO_005 1441 3UTR 100% 13.200 9.240 N Gnb1 n/a
9 TRCN0000034432 GCCAGCAGACAACCACATTTA pLKO.1 781 CDS 100% 13.200 7.920 N Gnb1 n/a
10 TRCN0000301617 GCCAGCAGACAACCACATTTA pLKO_005 781 CDS 100% 13.200 7.920 N Gnb1 n/a
11 TRCN0000036783 GCTTGTGATGCTTCAGCCAAA pLKO.1 867 CDS 100% 4.050 2.835 N GNB1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001160017.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00654 pDONR223 100% 90.1% 100% None (many diffs) n/a
2 ccsbBroad304_00654 pLX_304 0% 90.1% 100% V5 (many diffs) n/a
3 TRCN0000469902 TCTGGTCGCGCACGCAAGCGGTAA pLX_317 41.4% 90.1% 100% V5 (many diffs) n/a
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