Transcript: Mouse NM_001177767.1

Mus musculus reduced expression 2 (Rex2), mRNA.

Source:
NCBI, updated 2017-05-22
Taxon:
Mus musculus (mouse)
Gene:
Rex2 (100043034)
Length:
3998
CDS:
256..2313

Additional Resources:

NCBI RefSeq record:
NM_001177767.1
NBCI Gene record:
Rex2 (100043034)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001177767.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239543 ACAGGAGAGAAACCTTATAAA pLKO_005 1159 CDS 100% 15.000 7.500 Y Gm13212 n/a
2 TRCN0000240280 CTCCGAAAGTACACCTTATAA pLKO_005 594 CDS 100% 15.000 7.500 Y Zfp600 n/a
3 TRCN0000240278 GCATGTTCTTAATCCTATAAT pLKO_005 3795 3UTR 100% 15.000 7.500 Y Zfp600 n/a
4 TRCN0000284687 TACAGGAGAGAAACCTTATAA pLKO_005 1158 CDS 100% 15.000 7.500 Y Zfp984 n/a
5 TRCN0000414126 ACCGAAAGAAGTCTTCTAAAT pLKO_005 542 CDS 100% 13.200 6.600 Y Rex2 n/a
6 TRCN0000429213 AGGAATGGGAATGTCTCAATT pLKO_005 374 CDS 100% 13.200 6.600 Y Rex2 n/a
7 TRCN0000273019 CAACCATCCCATCTTAGTATT pLKO_005 1291 CDS 100% 13.200 6.600 Y Zfp980 n/a
8 TRCN0000086300 CAGGAGAGAAACCTTACAAAT pLKO.1 992 CDS 100% 13.200 6.600 Y Znf41-ps n/a
9 TRCN0000235353 CAGGAGAGAAACCTTACAAAT pLKO_005 992 CDS 100% 13.200 6.600 Y EG666605 n/a
10 TRCN0000239788 CAGGAGAGACACCTTACAAAT pLKO_005 2335 3UTR 100% 13.200 6.600 Y Zfp985 n/a
11 TRCN0000084461 CCTCCGAAAGTACACCTTATA pLKO.1 593 CDS 100% 13.200 6.600 Y Rex2 n/a
12 TRCN0000416415 CTTACACTTGTGGTGAATTTG pLKO_005 836 CDS 100% 13.200 6.600 Y Rex2 n/a
13 TRCN0000431848 GATGTGATGTTGGAGAATTAC pLKO_005 418 CDS 100% 13.200 6.600 Y Rex2 n/a
14 TRCN0000240281 TAGGAGAGAAACCGTACAAAT pLKO_005 1832 CDS 100% 13.200 6.600 Y Zfp600 n/a
15 TRCN0000273018 TCCGAAAGTACACCTTATAAC pLKO_005 595 CDS 100% 13.200 6.600 Y Zfp980 n/a
16 TRCN0000429043 ACCTTACAAATGTAATGAATG pLKO_005 1506 CDS 100% 10.800 5.400 Y Rex2 n/a
17 TRCN0000418910 ACCTTACAAATGTAGTGAATG pLKO_005 1002 CDS 100% 10.800 5.400 Y Rex2 n/a
18 TRCN0000421009 ATCCCATCTTAGTATTCATTG pLKO_005 1884 CDS 100% 10.800 5.400 Y Rex2 n/a
19 TRCN0000424067 ATGAATGTGACAAATCCTTTA pLKO_005 2443 3UTR 100% 10.800 5.400 Y Rex2 n/a
20 TRCN0000240277 ATGCAATGAATGCGACAAATG pLKO_005 2270 CDS 100% 10.800 5.400 Y Zfp600 n/a
21 TRCN0000431060 ATGTAGTGAATGCGACAAATG pLKO_005 1011 CDS 100% 10.800 5.400 Y Rex2 n/a
22 TRCN0000427418 GCCACTCTCCAATCCTCAAAC pLKO_005 631 CDS 100% 10.800 5.400 Y Rex2 n/a
23 TRCN0000240279 GTCAATGAGCATGGGCATAAC pLKO_005 523 CDS 100% 10.800 5.400 Y Zfp600 n/a
24 TRCN0000084462 CCAGGAAAGAAATCTTACAAA pLKO.1 907 CDS 100% 5.625 2.813 Y Rex2 n/a
25 TRCN0000084460 CCCATCTTAGTATTCATCATA pLKO.1 962 CDS 100% 5.625 2.813 Y Rex2 n/a
26 TRCN0000084458 GCACATATAAAGACTGTGTAA pLKO.1 689 CDS 100% 4.950 2.475 Y Rex2 n/a
27 TRCN0000084459 GCAGAGAATTTATCCAGGAAA pLKO.1 894 CDS 100% 4.950 2.475 Y Rex2 n/a
28 TRCN0000239545 CCTTACAAATGTAGTGAATTT pLKO_005 1927 CDS 100% 13.200 6.600 Y Gm13212 n/a
29 TRCN0000240039 TGATGTTGGAGAATTACAATA pLKO_005 422 CDS 100% 13.200 6.600 Y Zfp991 n/a
30 TRCN0000284909 TGTAATGAATGTGACAAATTC pLKO_005 1180 CDS 100% 13.200 6.600 Y Zfp980 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001177767.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.