Transcript: Human NM_001190947.1

Homo sapiens TNF receptor associated factor 1 (TRAF1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
TRAF1 (7185)
Length:
3715
CDS:
204..1088

Additional Resources:

NCBI RefSeq record:
NM_001190947.1
NBCI Gene record:
TRAF1 (7185)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001190947.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056887 CATTGTGGAGACCAGCACTTA pLKO.1 1067 CDS 100% 4.950 6.930 N TRAF1 n/a
2 TRCN0000359703 CCTTCTACACTGCCAAGTATG pLKO_005 721 CDS 100% 10.800 7.560 N TRAF1 n/a
3 TRCN0000368661 TGCGTGTGTTTGAGAACATTG pLKO_005 418 CDS 100% 10.800 7.560 N TRAF1 n/a
4 TRCN0000056885 CGTGTGTTTGAGAACATTGTT pLKO.1 420 CDS 100% 5.625 3.938 N TRAF1 n/a
5 TRCN0000056884 GCCTTCTACACTGCCAAGTAT pLKO.1 720 CDS 100% 5.625 3.938 N TRAF1 n/a
6 TRCN0000359705 CCTACGTGAAGGACGACACAA pLKO_005 1033 CDS 100% 4.950 3.465 N TRAF1 n/a
7 TRCN0000056883 GCAGTCTCAATGGGTCAGAAA pLKO.1 2679 3UTR 100% 4.950 3.465 N TRAF1 n/a
8 TRCN0000359704 TGTCGCTCTTCATCGTGATCA pLKO_005 802 CDS 100% 4.950 3.465 N TRAF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001190947.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07097 pDONR223 100% 70.5% 70.6% None 0_1ins366;654C>T n/a
2 ccsbBroad304_07097 pLX_304 0% 70.5% 70.6% V5 0_1ins366;654C>T n/a
3 TRCN0000474794 TAGATGCTTGAATGCCCGGACTTC pLX_317 25.8% 70.5% 70.6% V5 0_1ins366;654C>T n/a
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