Transcript: Human NM_001193362.1

Homo sapiens exonuclease 3'-5' domain containing 2 (EXD2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
EXD2 (55218)
Length:
5191
CDS:
406..2271

Additional Resources:

NCBI RefSeq record:
NM_001193362.1
NBCI Gene record:
EXD2 (55218)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001193362.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000051631 CCAAGAACGTTATTGGATATT pLKO.1 850 CDS 100% 13.200 9.240 N EXD2 n/a
2 TRCN0000327893 CCAAGAACGTTATTGGATATT pLKO_005 850 CDS 100% 13.200 9.240 N EXD2 n/a
3 TRCN0000312684 GACTATTACTTGATGGTTAAA pLKO_005 1633 CDS 100% 13.200 9.240 N EXD2 n/a
4 TRCN0000312741 GCAAGCTTCTGCAGGATTATG pLKO_005 923 CDS 100% 13.200 9.240 N EXD2 n/a
5 TRCN0000312677 TTGTCTAGTGCCTCGGTTTAT pLKO_005 2630 3UTR 100% 13.200 9.240 N EXD2 n/a
6 TRCN0000051630 CCAGATTTCAGTGGCTCTCTT pLKO.1 1146 CDS 100% 4.950 3.465 N EXD2 n/a
7 TRCN0000051629 CCTCTTTATGATAACTGCTTT pLKO.1 1462 CDS 100% 4.950 3.465 N EXD2 n/a
8 TRCN0000051628 GCCAAGAAATAAGAAGTCTAA pLKO.1 1347 CDS 100% 4.950 3.465 N EXD2 n/a
9 TRCN0000051632 CGGAAGAACGTGATTCCACAT pLKO.1 1696 CDS 100% 4.050 2.835 N EXD2 n/a
10 TRCN0000327822 CGGAAGAACGTGATTCCACAT pLKO_005 1696 CDS 100% 4.050 2.835 N EXD2 n/a
11 TRCN0000173087 CAGATGAGGAAACTGAGGCTT pLKO.1 301 5UTR 100% 2.640 1.320 Y FLJ45966 n/a
12 TRCN0000216762 GTAATGGGCTTAGCCTGAAAT pLKO.1 1010 CDS 100% 13.200 10.560 N Exd2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001193362.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03552 pDONR223 100% 79.8% 79.8% None 1_375del n/a
2 ccsbBroad304_03552 pLX_304 0% 79.8% 79.8% V5 1_375del n/a
3 TRCN0000473850 AGGAGTAGTTAGACATCTGCCGGA pLX_317 38.6% 79.8% 79.8% V5 1_375del n/a
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