Construct: ORF TRCN0000479891

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005514.1_s317c1
Derived from:
ccsbBroadEn_12152
DNA Barcode:
ATGGAGTACCAACCTGCCATGTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
OXR1 (55074)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479891
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55074 OXR1 oxidation resistance 1 XM_017013594.2 100% 100%
2 human 55074 OXR1 oxidation resistance 1 XM_017013593.2 96.5% 96.5% 1691_1771del
3 human 55074 OXR1 oxidation resistance 1 XM_017013592.1 94.3% 94.3% 1_54del;1745_1825del
4 human 55074 OXR1 oxidation resistance 1 XM_017013591.1 94.2% 94.2% 1_57del;1748_1828del
5 human 55074 OXR1 oxidation resistance 1 XM_017013590.1 94% 94% 1_63del;1754_1834del
6 human 55074 OXR1 oxidation resistance 1 NM_181354.4 90.3% 90.3% 1_243del
7 human 55074 OXR1 oxidation resistance 1 NM_018002.3 89.5% 89.5% 1_264del
8 human 55074 OXR1 oxidation resistance 1 XM_006716595.2 89.4% 89.4% 1_267del
9 human 55074 OXR1 oxidation resistance 1 XM_017013589.2 87.5% 87.5% 1_243del;1934_2014del
10 human 55074 OXR1 oxidation resistance 1 NM_001198533.1 86.8% 86.8% 1_264del;1955_2035del
11 human 55074 OXR1 oxidation resistance 1 NM_001198532.1 86.7% 86.7% 1_267del;1958_2038del
12 human 55074 OXR1 oxidation resistance 1 XM_017013599.2 80% 72% 0_1ins268;143_144ins185
13 human 55074 OXR1 oxidation resistance 1 XM_017013600.2 80% 72% 0_1ins268;143_144ins185
14 human 55074 OXR1 oxidation resistance 1 XM_017013595.2 77.3% 69.6% 0_1ins268;143_144ins185;1238_1318del
15 human 55074 OXR1 oxidation resistance 1 XM_017013596.1 77.3% 69.6% 0_1ins268;143_144ins185;1238_1318del
16 human 55074 OXR1 oxidation resistance 1 XM_017013597.1 77.3% 69.6% 0_1ins268;143_144ins185;1238_1318del
17 human 55074 OXR1 oxidation resistance 1 XM_017013598.2 77.3% 69.6% 0_1ins268;143_144ins185;1238_1318del
18 human 55074 OXR1 oxidation resistance 1 XR_001745546.1 67.3% 1_361del;2052_2251del;2470_2471ins365
19 human 55074 OXR1 oxidation resistance 1 XR_001745547.1 63.9% 1_361del;2054_2172del;2242_2243ins512
20 human 55074 OXR1 oxidation resistance 1 XR_001745548.1 47.1% 1_591del;2282_2481del;3066_4821del
21 human 55074 OXR1 oxidation resistance 1 NM_001198534.1 30% 27.2% (many diffs)
22 human 55074 OXR1 oxidation resistance 1 NM_001198535.1 27.4% 25.3% (many diffs)
23 mouse 170719 Oxr1 oxidation resistance 1 XM_006520531.3 28% 26.5% (many diffs)
24 mouse 170719 Oxr1 oxidation resistance 1 NM_001130164.1 25.2% 24.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2340
ORF length:
2274
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc ttttcagaaa cctaaaggga ctattgagta tactgttgaa tcaagggatt
121ctttgaatag catagccctg aagtttgata caacacctaa cgaacttgtt caattaaata
181agttattctc ccgagcagtt gttactggac aggttctgta tgttcctgat cctgaatatg
241tctccagtgt tgagagctct ccatctctaa gccccgtaag tcctctgtca ccaacatcat
301ctgaggctga atttgataag accactaatc ctgatgtcca tccaacagaa gcaactccct
361catctacttt cactggtatt cgacctgcac gagttgtatc ttcaacttct gaggaggagg
421aagcatttac tgagaaattt cttaaaatta attgcaaata tattaccagt ggcaagggca
481cagtcagtgg tgtgctgcta gttacaccaa ataatataat gtttgatcca cataaaaatg
541accctttggt tcaagagaat ggctgtgagg aatatggcat catgtgtcca atggaagagg
601tgatgtcagc tgcaatgtac aaagaaattt tggatagcaa aataaaggaa tctttaccca
661tagatataga tcagctatca ggaagggact tctgccattc aaagaaaatg acaggaagta
721acactgagga aatagactca agaatccgag atgcaggtaa tgatagtgcc agcactgctc
781ctaggagcac tgaggagtct ctttctgaag atgtgttcac agaatcagaa ctttccccta
841tacgagagga gcttgtatct tcagatgaac tgcgacaaga taaatcttct ggtgcgtcat
901cagaatctgt gcaaactgtc aatcaggctg aagtagaaag tctgacagtc aaatcagaat
961ctactggtac tcctggtcac ttaagatctg atactgaaca ttctacaaat gaagttggga
1021ctttatgtca taaaactgat ttaaataatc ttgaaatggc cattaaggaa gatcagattg
1081cagataactt tcaaggaata tcaggtccta aagaagacag cacaagtata aaaggtaatt
1141cagaccagga ttcttttctt catgagaatt cgttacacca agaagagagt caaaaagaaa
1201atatgccttg tggggaaaca gcagaattta aacaaaagca aagtgttaac aaaggaaaac
1261aaggaaagga gcaaaatcag gactcacaga cagaggcaga agagctacgc aaactttgga
1321aaacccatac tatgcaacaa actaaacagc aaagggaaaa tattcaacaa gtgtcacaaa
1381aagaagctaa gcataaaatt acatctgctg atggacacat agaaagttct gcacttttaa
1441aagaaaagca aaggcatcga ttacataagt tcttgtgtct cagagttgga aaaccaatga
1501ggaaaacgtt tgtatctcaa gcaagtgcta caatgcaaca gtatgcacag agagataaga
1561aacatgaata ttggtttgct gtgccacaag aaaggacaga tcacttgtat gccttcttca
1621ttcagtggag tccagaaata tatgcagaag atactggcga atataccaga gaacctggat
1681ttatagtagt aaaaaagatt gaggagtctg aaacaattga ggattctagt aatcaagcag
1741cagccagaga atgggagatt actacaaggg aagacataaa ttcaaagcag gttgctacag
1801tgaaagcaga cctggagtct gaatcttttc gaccaaacct aagtgatccc agtgaacttt
1861tactgccaga tcaaattgaa aagcttacca agcatcttcc accaagaaca attGGCTATC
1921CATGGACTCT TGTTTATGGT ACTGGAAAAC ATGGCACAAG CTTGAAAACT CTTTATCGAA
1981CAATGACAGG TTTAGACACC CCAGTGCTGA TGGTGATTAA AGACAGTGAT GGACAGGTTT
2041TTGGTGCGTT AGCATCTGAG CCACTGAAAG TGAGTGATGG CTTTTATGGT ACTGGAGAGA
2101CCTTTGTTTT TACATTCTGT CCGGAGTTTG AGGTCTTTAA GTGGACAGGA GATAATATGT
2161TTTTTATCAA AGGAGACATG GATTCACTAG CTTTCGGTGG TGGAGGAGGA GAATTTGCGC
2221TTTGGCTTGA TGGAGATCTC TACCATGGAA GAAGCCATTC TTGTAAAACG TTTGGGAATC
2281GTACACTTTC TAAGAAGGAA GATTTCTTTA TCCAAGATAT TGAAATCTGG GCTTTTGAAT
2341ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
2401GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
2461TTTATATATC TTGTGGAAAG GACGAATGGA GTACCAACCT GCCATGTTCA CGCGTTAAGT
2521Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)