Transcript: Human NM_001199577.1

Homo sapiens GIMAP1-GIMAP5 readthrough (GIMAP1-GIMAP5), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-03-19
Taxon:
Homo sapiens (human)
Gene:
GIMAP1-GIMAP5 (100527949)
Length:
2262
CDS:
141..1676

Additional Resources:

NCBI RefSeq record:
NM_001199577.1
NBCI Gene record:
GIMAP1-GIMAP5 (100527949)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001199577.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000436861 GGACCCTGGAGCACTTCTAAT pLKO_005 1683 3UTR 100% 13.200 6.600 Y GIMAP5 n/a
2 TRCN0000423783 TCGTGGACACTCCGGACATTT pLKO_005 379 CDS 100% 13.200 6.600 Y GIMAP1 n/a
3 TRCN0000428342 TCATCCTCTTCACCCACAAAG pLKO_005 1192 CDS 100% 10.800 5.400 Y GIMAP5 n/a
4 TRCN0000048458 CGAGAGTAACTGGGCATACAA pLKO.1 1541 CDS 100% 5.625 2.813 Y GIMAP5 n/a
5 TRCN0000048460 CTGAAGGTAGATCAGAAGATA pLKO.1 790 CDS 100% 5.625 2.813 Y GIMAP5 n/a
6 TRCN0000048459 CCTCAGAGTCAAACACTTGAT pLKO.1 1568 CDS 100% 4.950 2.475 Y GIMAP5 n/a
7 TRCN0000048346 TGTCTATGGTTTAGAAGAGAA pLKO.1 176 CDS 100% 4.950 2.475 Y GIMAP1 n/a
8 TRCN0000048462 AGGATTATCCTAGTGGGCAAA pLKO.1 837 CDS 100% 4.050 2.025 Y GIMAP5 n/a
9 TRCN0000048461 CCCTGGATGACTATGTAGCAA pLKO.1 1231 CDS 100% 3.000 1.500 Y GIMAP5 n/a
10 TRCN0000048347 CAAGTGTCCAAGACAGATCCT pLKO.1 408 CDS 100% 2.640 1.320 Y GIMAP1 n/a
11 TRCN0000418227 ACGCGGAGGCTCATCCTTGTT pLKO_005 219 CDS 100% 1.650 0.825 Y GIMAP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199577.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08524 pDONR223 100% 60% 59.8% None 1_612del;1525C>G n/a
2 ccsbBroad304_08524 pLX_304 0% 60% 59.8% V5 1_612del;1525C>G n/a
3 TRCN0000472183 TACGCCGTAATGAACCATCCGAGC pLX_317 48.7% 60% 59.8% V5 1_612del;1525C>G n/a
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