Transcript: Human NM_001204745.2

Homo sapiens cadherin 16 (CDH16), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
CDH16 (1014)
Length:
2738
CDS:
96..2468

Additional Resources:

NCBI RefSeq record:
NM_001204745.2
NBCI Gene record:
CDH16 (1014)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001204745.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437874 ATTCCCATGGCGAGGACTATG pLKO_005 1024 CDS 100% 10.800 15.120 N CDH16 n/a
2 TRCN0000435688 TCGCAGTCACAGATATCAATG pLKO_005 1405 CDS 100% 10.800 15.120 N CDH16 n/a
3 TRCN0000055617 CCCTTTATACCTGACCAAGTT pLKO.1 206 CDS 100% 4.950 3.960 N CDH16 n/a
4 TRCN0000055616 CTCTGCAAGAACCTCAGTTAT pLKO.1 1635 CDS 100% 13.200 9.240 N CDH16 n/a
5 TRCN0000417931 CCAATTCCCACGTTGTGTATC pLKO_005 1201 CDS 100% 10.800 7.560 N CDH16 n/a
6 TRCN0000055614 CCTGGTAGCAATAGGAATCTT pLKO.1 2357 CDS 100% 5.625 3.938 N CDH16 n/a
7 TRCN0000055613 GCAGAGAATCTCAAAGTCCTA pLKO.1 834 CDS 100% 2.640 1.848 N CDH16 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001204745.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00275 pDONR223 100% 95.2% 95.2% None 1922_1923ins117 n/a
2 ccsbBroad304_00275 pLX_304 0% 95.2% 95.2% V5 1922_1923ins117 n/a
3 TRCN0000468786 GCCAACTAATATAGAGAACTTCTC pLX_317 4% 95.2% 95.2% V5 1922_1923ins117 n/a
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