Construct: ORF ccsbBroadEn_00275

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007392.1_s300c1, BRDN0000385427
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH16 (1014)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1014 CDH16 cadherin 16 NM_004062.4 100% 100%
2 human 1014 CDH16 cadherin 16 NM_001204744.2 97.3% 97.3% 1921_1922ins66
3 human 1014 CDH16 cadherin 16 NM_001204745.2 95.2% 95.2% 1922_1923ins117
4 human 1014 CDH16 cadherin 16 XM_011522807.2 92.4% 92.4% 1357_1358ins189
5 human 1014 CDH16 cadherin 16 NM_001204746.2 88.2% 88.2% 359_360ins291
6 human 1014 CDH16 cadherin 16 XM_005255770.2 78.5% 78.5% 0_1ins534
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2553
ORF length:
2487
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT CCCTGCCTGG CTGTGGCTGC TTTGTGTCTC CGTCCCCCAG GCTCTCCCCA
121AGGCCCAGCC TGCAGAGCTG TCTGTGGAAG TTCCAGAAAA CTATGGTGGA AATTTCCCTT
181TATACCTGAC CAAGTTGCCG CTGCCCCGTG AGGGGGCTGA AGGCCAGATC GTGCTGTCAG
241GGGACTCAGG CAAGGCAACT GAGGGCCCAT TTGCTATGGA TCCAGATTCT GGCTTCCTGC
301TGGTGACCAG GGCCCTGGAC CGAGAGGAGC AGGCAGAGTA CCAGCTACAG GTCACCCTGG
361AGATGCAGGA TGGACATGTC TTGTGGGGTC CACAGCCTGT GCTTGTGCAC GTGAAGGATG
421AGAATGACCA GGTGCCCCAT TTCTCTCAAG CCATCTACAG AGCTCGGCTG AGCCGGGGTA
481CCAGGCCTGG CATCCCCTTC CTCTTCCTTG AGGCTTCAGA CCGGGATGAG CCAGGCACAG
541CCAACTCGGA TCTTCGATTC CACATCCTGA GCCAGGCTCC AGCCCAGCCT TCCCCAGACA
601TGTTCCAGCT GGAGCCTCGG CTGGGGGCTC TGGCCCTCAG CCCCAAGGGG AGCACCAGCC
661TTGACCACGC CCTGGAGAGG ACCTACCAGC TGTTGGTACA GGTCAAGGAC ATGGGTGACC
721AGGCCTCAGG CCACCAGGCC ACTGCCACCG TGGAAGTCTC CATCATAGAG AGCACCTGGG
781TGTCCCTAGA GCCTATCCAC CTGGCAGAGA ATCTCAAAGT CCTATACCCG CACCACATGG
841CCCAGGTACA CTGGAGTGGG GGTGATGTGC ACTATCACCT GGAGAGCCAT CCCCCGGGAC
901CCTTTGAAGT GAATGCAGAG GGAAACCTCT ACGTGACCAG AGAGCTGGAC AGAGAAGCCC
961AGGCTGAGTA CCTGCTCCAG GTGCGGGCTC AGAATTCCCA TGGCGAGGAC TATGCGGCCC
1021CTCTGGAGCT GCACGTGCTG GTGATGGATG AGAATGACAA CGTGCCTATC TGCCCTCCCC
1081GTGACCCCAC AGTCAGCATC CCTGAGCTCA GTCCACCAGG TACTGAAGTG ACTAGACTGT
1141CAGCAGAGGA TGCAGATGCC CCCGGCTCCC CCAATTCCCA CGTTGTGTAT CAGCTCCTGA
1201GCCCTGAGCC TGAGGATGGG GTAGAGGGGA GAGCCTTCCA GGTGGACCCC ACTTCAGGCA
1261GTGTGACGCT GGGGGTGCTC CCACTCCGAG CAGGCCAGAA CATCCTGCTT CTGGTGCTGG
1321CCATGGACCT GGCAGGCGCA GAGGGTGGCT TCAGCAGCAC GTGTGAAGTC GAAGTCGCAG
1381TCACAGATAT CAATGATCAC GCCCCTGAGT TCATCACTTC CCAGATTGGG CCTATAAGCC
1441TCCCTGAGGA TGTGGAGCCC GGGACTCTGG TGGCCATGCT AACAGCCATT GATGCTGACC
1501TCGAGCCCGC CTTCCGCCTC ATGGATTTTG CCATTGAGAG GGGAGACACA GAAGGGACTT
1561TTGGCCTGGA TTGGGAGCCA GACTCTGGGC ATGTTAGACT CAGACTCTGC AAGAACCTCA
1621GTTATGAGGC AGCTCCAAGT CATGAGGTGG TGGTGGTGGT GCAGAGTGTG GCGAAGCTGG
1681TGGGGCCAGG CCCAGGCCCT GGAGCCACCG CCACGGTGAC TGTGCTAGTG GAGAGAGTGA
1741TGCCACCCCC CAAGTTGGAC CAGGAGAGCT ACGAGGCCAG TGTCCCCATC AGTGCCCCAG
1801CCGGCTCTTT CCTGCTGACC ATCCAGCCCT CCGACCCCAT CAGCCGAACC CTCAGGTTCT
1861CCCTAGTCAA TGACTCAGAG GGCTGGCTCT GCATTGAGAA ATTCTCCGGG GAGGTGCACA
1921CCGCCCAGTC CCTGCAGGGC GCCCAGCCTG GGGACACCTA CACGGTGCTT GTGGAGGCCC
1981AGGATACAGA TGAGCCGAGA CTGAGCGCTT CTGCACCCCT GGTGATCCAC TTCCTAAAGG
2041CCCCTCCTGC CCCAGCCCTG ACTCTTGCCC CTGTGCCCTC CCAATACCTC TGCACACCCC
2101GCCAAGACCA TGGCTTGATC GTGAGTGGAC CCAGCAAGGA CCCCGATCTG GCCAGTGGGC
2161ACGGTCCCTA CAGCTTCACC CTTGGTCCCA ACCCCACGGT GCAACGGGAT TGGCGCCTCC
2221AGACTCTCAA TGGTTCCCAT GCCTACCTCA CCTTGGCCCT GCATTGGGTG GAGCCACGTG
2281AACACATAAT CCCCGTGGTG GTCAGCCACA ATGCCCAGAT GTGGCAGCTC CTGGTTCGAG
2341TGATCGTGTG TCGCTGCAAC GTGGAGGGGC AGTGCATGCG CAAGGTGGGC CGCATGAAGG
2401GCATGCCCAC GAAGCTGTCG GCAGTGGGCA TCCTTGTAGG CACCCTGGTA GCAATAGGAA
2461TCTTCCTCAT CCTCATTTTC ACCCACTGGA CCATGTCAAG GAAGAAGGAC CCGGATCAAC
2521CAGCAGACAG CGTGCCCCTG AAGGCGACTG TCTGCCCAAC TTTCTTGTAC AAAGTtggca
2581ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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