Construct: ORF ccsbBroadEn_00275
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007392.1_s300c1, BRDN0000385427
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDH16 (1014)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1014 | CDH16 | cadherin 16 | NM_004062.4 | 100% | 100% | |
| 2 | human | 1014 | CDH16 | cadherin 16 | NM_001204744.2 | 97.3% | 97.3% | 1921_1922ins66 |
| 3 | human | 1014 | CDH16 | cadherin 16 | NM_001204745.2 | 95.2% | 95.2% | 1922_1923ins117 |
| 4 | human | 1014 | CDH16 | cadherin 16 | XM_011522807.2 | 92.4% | 92.4% | 1357_1358ins189 |
| 5 | human | 1014 | CDH16 | cadherin 16 | NM_001204746.2 | 88.2% | 88.2% | 359_360ins291 |
| 6 | human | 1014 | CDH16 | cadherin 16 | XM_005255770.2 | 78.5% | 78.5% | 0_1ins534 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2553
- ORF length:
- 2487
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT CCCTGCCTGG CTGTGGCTGC TTTGTGTCTC CGTCCCCCAG GCTCTCCCCA 121 AGGCCCAGCC TGCAGAGCTG TCTGTGGAAG TTCCAGAAAA CTATGGTGGA AATTTCCCTT 181 TATACCTGAC CAAGTTGCCG CTGCCCCGTG AGGGGGCTGA AGGCCAGATC GTGCTGTCAG 241 GGGACTCAGG CAAGGCAACT GAGGGCCCAT TTGCTATGGA TCCAGATTCT GGCTTCCTGC 301 TGGTGACCAG GGCCCTGGAC CGAGAGGAGC AGGCAGAGTA CCAGCTACAG GTCACCCTGG 361 AGATGCAGGA TGGACATGTC TTGTGGGGTC CACAGCCTGT GCTTGTGCAC GTGAAGGATG 421 AGAATGACCA GGTGCCCCAT TTCTCTCAAG CCATCTACAG AGCTCGGCTG AGCCGGGGTA 481 CCAGGCCTGG CATCCCCTTC CTCTTCCTTG AGGCTTCAGA CCGGGATGAG CCAGGCACAG 541 CCAACTCGGA TCTTCGATTC CACATCCTGA GCCAGGCTCC AGCCCAGCCT TCCCCAGACA 601 TGTTCCAGCT GGAGCCTCGG CTGGGGGCTC TGGCCCTCAG CCCCAAGGGG AGCACCAGCC 661 TTGACCACGC CCTGGAGAGG ACCTACCAGC TGTTGGTACA GGTCAAGGAC ATGGGTGACC 721 AGGCCTCAGG CCACCAGGCC ACTGCCACCG TGGAAGTCTC CATCATAGAG AGCACCTGGG 781 TGTCCCTAGA GCCTATCCAC CTGGCAGAGA ATCTCAAAGT CCTATACCCG CACCACATGG 841 CCCAGGTACA CTGGAGTGGG GGTGATGTGC ACTATCACCT GGAGAGCCAT CCCCCGGGAC 901 CCTTTGAAGT GAATGCAGAG GGAAACCTCT ACGTGACCAG AGAGCTGGAC AGAGAAGCCC 961 AGGCTGAGTA CCTGCTCCAG GTGCGGGCTC AGAATTCCCA TGGCGAGGAC TATGCGGCCC 1021 CTCTGGAGCT GCACGTGCTG GTGATGGATG AGAATGACAA CGTGCCTATC TGCCCTCCCC 1081 GTGACCCCAC AGTCAGCATC CCTGAGCTCA GTCCACCAGG TACTGAAGTG ACTAGACTGT 1141 CAGCAGAGGA TGCAGATGCC CCCGGCTCCC CCAATTCCCA CGTTGTGTAT CAGCTCCTGA 1201 GCCCTGAGCC TGAGGATGGG GTAGAGGGGA GAGCCTTCCA GGTGGACCCC ACTTCAGGCA 1261 GTGTGACGCT GGGGGTGCTC CCACTCCGAG CAGGCCAGAA CATCCTGCTT CTGGTGCTGG 1321 CCATGGACCT GGCAGGCGCA GAGGGTGGCT TCAGCAGCAC GTGTGAAGTC GAAGTCGCAG 1381 TCACAGATAT CAATGATCAC GCCCCTGAGT TCATCACTTC CCAGATTGGG CCTATAAGCC 1441 TCCCTGAGGA TGTGGAGCCC GGGACTCTGG TGGCCATGCT AACAGCCATT GATGCTGACC 1501 TCGAGCCCGC CTTCCGCCTC ATGGATTTTG CCATTGAGAG GGGAGACACA GAAGGGACTT 1561 TTGGCCTGGA TTGGGAGCCA GACTCTGGGC ATGTTAGACT CAGACTCTGC AAGAACCTCA 1621 GTTATGAGGC AGCTCCAAGT CATGAGGTGG TGGTGGTGGT GCAGAGTGTG GCGAAGCTGG 1681 TGGGGCCAGG CCCAGGCCCT GGAGCCACCG CCACGGTGAC TGTGCTAGTG GAGAGAGTGA 1741 TGCCACCCCC CAAGTTGGAC CAGGAGAGCT ACGAGGCCAG TGTCCCCATC AGTGCCCCAG 1801 CCGGCTCTTT CCTGCTGACC ATCCAGCCCT CCGACCCCAT CAGCCGAACC CTCAGGTTCT 1861 CCCTAGTCAA TGACTCAGAG GGCTGGCTCT GCATTGAGAA ATTCTCCGGG GAGGTGCACA 1921 CCGCCCAGTC CCTGCAGGGC GCCCAGCCTG GGGACACCTA CACGGTGCTT GTGGAGGCCC 1981 AGGATACAGA TGAGCCGAGA CTGAGCGCTT CTGCACCCCT GGTGATCCAC TTCCTAAAGG 2041 CCCCTCCTGC CCCAGCCCTG ACTCTTGCCC CTGTGCCCTC CCAATACCTC TGCACACCCC 2101 GCCAAGACCA TGGCTTGATC GTGAGTGGAC CCAGCAAGGA CCCCGATCTG GCCAGTGGGC 2161 ACGGTCCCTA CAGCTTCACC CTTGGTCCCA ACCCCACGGT GCAACGGGAT TGGCGCCTCC 2221 AGACTCTCAA TGGTTCCCAT GCCTACCTCA CCTTGGCCCT GCATTGGGTG GAGCCACGTG 2281 AACACATAAT CCCCGTGGTG GTCAGCCACA ATGCCCAGAT GTGGCAGCTC CTGGTTCGAG 2341 TGATCGTGTG TCGCTGCAAC GTGGAGGGGC AGTGCATGCG CAAGGTGGGC CGCATGAAGG 2401 GCATGCCCAC GAAGCTGTCG GCAGTGGGCA TCCTTGTAGG CACCCTGGTA GCAATAGGAA 2461 TCTTCCTCAT CCTCATTTTC ACCCACTGGA CCATGTCAAG GAAGAAGGAC CCGGATCAAC 2521 CAGCAGACAG CGTGCCCCTG AAGGCGACTG TCTGCCCAAC TTTCTTGTAC AAAGTtggca 2581 ttataagaaa gcattgctta tcaatttgtt gcaacgaac