Transcript: Human NM_001244567.1

Homo sapiens BH3 interacting domain death agonist (BID), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-03-19
Taxon:
Homo sapiens (human)
Gene:
BID (637)
Length:
2128
CDS:
85..672

Additional Resources:

NCBI RefSeq record:
NM_001244567.1
NBCI Gene record:
BID (637)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001244567.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000062709 CTTTCACACAACAGTGAATTT pLKO.1 594 CDS 100% 1.320 1.056 N BID n/a
2 TRCN0000327897 CTTTCACACAACAGTGAATTT pLKO_005 594 CDS 100% 1.320 1.056 N BID n/a
3 TRCN0000312746 GAAGACATCATCCGGAATATT pLKO_005 322 CDS 100% 15.000 10.500 N BID n/a
4 TRCN0000312688 ATGTCCATTTACACGTATTTG pLKO_005 874 3UTR 100% 13.200 9.240 N BID n/a
5 TRCN0000062711 GTGAGGAGCTTAGCCAGAAAT pLKO.1 640 CDS 100% 13.200 9.240 N BID n/a
6 TRCN0000327898 GTGAGGAGCTTAGCCAGAAAT pLKO_005 640 CDS 100% 13.200 9.240 N BID n/a
7 TRCN0000062712 CAGGGATGAGTGCATCACAAA pLKO.1 117 CDS 100% 4.950 3.465 N BID n/a
8 TRCN0000327896 CAGGGATGAGTGCATCACAAA pLKO_005 117 CDS 100% 4.950 3.465 N BID n/a
9 TRCN0000062708 CCTCCAAAGCTGTTCTGACAA pLKO.1 156 CDS 100% 4.950 3.465 N BID n/a
10 TRCN0000062710 TGGGAAGAATAGAGGCAGATT pLKO.1 290 CDS 100% 4.950 3.465 N BID n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001244567.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00161 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00161 pLX_304 0% 100% 100% V5 n/a
3 ccsbBroadEn_05891 pDONR223 100% 99.8% 100% None 528T>C n/a
4 ccsbBroadEn_15368 pDONR223 0% 99.6% 99.4% None 486C>A;528T>C n/a
5 ccsbBroad304_15368 pLX_304 0% 99.6% 99.4% V5 486C>A;528T>C n/a
6 TRCN0000472971 ACAAAGGCACGTTGATGTCAATTG pLX_317 86.4% 99.6% 99.4% V5 486C>A;528T>C n/a
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