Transcript: Human NM_001270458.1

Homo sapiens monoamine oxidase A (MAOA), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
MAOA (4128)
Length:
5438
CDS:
1943..3127

Additional Resources:

NCBI RefSeq record:
NM_001270458.1
NBCI Gene record:
MAOA (4128)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001270458.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233100 ATAAGGAGTTGCCGCATATTA pLKO_005 4677 3UTR 100% 15.000 21.000 N MAOA n/a
2 TRCN0000233096 AGTGAGCGTCTCGTTCAATAT pLKO_005 1823 5UTR 100% 13.200 18.480 N MAOA n/a
3 TRCN0000233099 AGCAGCTAGGGAGGTCTTAAA pLKO_005 2905 CDS 100% 13.200 10.560 N MAOA n/a
4 TRCN0000046009 CGGATATTCTCTGTCACCAAT pLKO.1 2159 CDS 100% 4.950 3.960 N MAOA n/a
5 TRCN0000046012 GCTGATCGACTTGCTAAGCTA pLKO.1 2615 CDS 100% 3.000 2.400 N MAOA n/a
6 TRCN0000233097 ATGAGTGCAAATACGTAATTA pLKO_005 2334 CDS 100% 15.000 10.500 N MAOA n/a
7 TRCN0000046008 GCAGAGAGAAACCAGTTAATT pLKO.1 2408 CDS 100% 15.000 10.500 N MAOA n/a
8 TRCN0000233098 AGCAGAGAGAAACCAGTTAAT pLKO_005 2407 CDS 100% 13.200 9.240 N MAOA n/a
9 TRCN0000046011 CCAGTCAAGTGACAACATCAT pLKO.1 2287 CDS 100% 4.950 3.465 N MAOA n/a
10 TRCN0000046010 GCCTGCTGAAGATCATTGGAT pLKO.1 3042 CDS 100% 3.000 2.100 N MAOA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001270458.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06557 pDONR223 100% 74.6% 74.7% None 0_1ins399;1177C>A n/a
2 ccsbBroad304_06557 pLX_304 0% 74.6% 74.7% V5 0_1ins399;1177C>A n/a
3 TRCN0000473431 GGTCCTACTTCGACATAAGTCGCG pLX_317 26.7% 74.6% 74.7% V5 0_1ins399;1177C>A n/a
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