Transcript: Human NM_001276504.2

Homo sapiens succinate dehydrogenase complex subunit D (SDHD), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
SDHD (6392)
Length:
1222
CDS:
36..398

Additional Resources:

NCBI RefSeq record:
NM_001276504.2
NBCI Gene record:
SDHD (6392)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001276504.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231553 TCTGCTTCCGGCTGCTTATTT pLKO_005 152 CDS 100% 15.000 21.000 N SDHD n/a
2 TRCN0000039844 GCGAGAGGGTTGTCAGTGTTT pLKO.1 121 CDS 100% 4.950 6.930 N SDHD n/a
3 TRCN0000036578 TGCTATTTCAACTATCACGAT pLKO.1 336 CDS 100% 2.640 3.696 N SDHDP7 n/a
4 TRCN0000231556 ACCAACTGTAAATTGAGATTT pLKO_005 1031 3UTR 100% 13.200 9.240 N SDHD n/a
5 TRCN0000231554 CTTGCTCTGCGATGGACTATT pLKO_005 178 CDS 100% 13.200 9.240 N SDHD n/a
6 TRCN0000039843 GCTCACAATAAGGAAGAAATA pLKO.1 466 3UTR 100% 13.200 9.240 N SDHD n/a
7 TRCN0000231555 TTTGCTGGGCTTTGCTATTTC pLKO_005 324 CDS 100% 13.200 9.240 N SDHD n/a
8 TRCN0000010501 CCACCTACTGATGGTTACATA pLKO.1 868 3UTR 100% 5.625 3.938 N SDHD n/a
9 TRCN0000039847 GCACTTTCAGCTTTAACCTTT pLKO.1 306 CDS 100% 4.950 3.465 N SDHD n/a
10 TRCN0000036577 GTTGTTACTGACTATGTTCAT pLKO.1 246 CDS 100% 4.950 3.465 N SDHDP7 n/a
11 TRCN0000036575 CGGCTGCTTATTTGAATCCTT pLKO.1 160 CDS 100% 3.000 2.100 N SDHDP7 n/a
12 TRCN0000010500 ATATCTAAGTTGTGAGACTGA pLKO.1 578 3UTR 100% 2.640 1.848 N SDHD n/a
13 TRCN0000018370 GAATCCTTGCTCTGCGATGGA pLKO.1 173 CDS 100% 2.640 1.848 N SDHD n/a
14 TRCN0000036576 GCTTTAACCTTTGCTGGGCTT pLKO.1 315 CDS 100% 2.160 1.512 N SDHDP7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001276504.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01515 pDONR223 100% 75.4% 75.4% None 52_53ins117 n/a
2 ccsbBroad304_01515 pLX_304 0% 75.4% 75.4% V5 52_53ins117 n/a
3 TRCN0000473781 CCTCCAGTCAGAGTCATCAAGCAA pLX_317 100% 75.4% 75.4% V5 52_53ins117 n/a
4 ccsbBroadEn_06929 pDONR223 100% 75.2% 75.4% None 52_53ins117;87C>T n/a
5 ccsbBroad304_06929 pLX_304 0% 75.2% 75.4% V5 52_53ins117;87C>T n/a
6 TRCN0000472855 AATTACCAAGATATAAATGCTTGC pLX_317 81.8% 75.2% 75.4% V5 52_53ins117;87C>T n/a
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