Transcript: Human NM_001280543.1

Homo sapiens double PHD fingers 3 (DPF3), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
DPF3 (8110)
Length:
4221
CDS:
143..1246

Additional Resources:

NCBI RefSeq record:
NM_001280543.1
NBCI Gene record:
DPF3 (8110)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001280543.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235748 GGTTCGCCCACAGCAGATAAA pLKO_005 1211 CDS 100% 13.200 18.480 N DPF3 n/a
2 TRCN0000013154 AGAGGATATTCCCAAGCGAAA pLKO.1 658 CDS 100% 4.050 5.670 N DPF3 n/a
3 TRCN0000013156 CCGGAGTTACAACTCACGGCT pLKO.1 244 CDS 100% 0.220 0.308 N DPF3 n/a
4 TRCN0000235746 ACGTACCACGGAGGACTTATT pLKO_005 1093 CDS 100% 13.200 9.240 N DPF3 n/a
5 TRCN0000433553 ACGTACCACGGAGGACTTATT pLKO_005 1093 CDS 100% 13.200 9.240 N Dpf3 n/a
6 TRCN0000086345 CGGCTTTGATGAGGACGATTT pLKO.1 1150 CDS 100% 10.800 7.560 N Dpf3 n/a
7 TRCN0000235749 GGCTTTGATGAGGACGATTTG pLKO_005 1151 CDS 100% 10.800 7.560 N DPF3 n/a
8 TRCN0000235747 TGGCGCAAGAAGAGACGATTG pLKO_005 407 CDS 100% 6.000 4.200 N DPF3 n/a
9 TRCN0000419432 CATCTGTGGCAAGCGCTACAA pLKO_005 775 CDS 100% 4.950 3.465 N Dpf3 n/a
10 TRCN0000013157 CTGGCGCAAGAAGAGACGATT pLKO.1 406 CDS 100% 4.950 3.465 N DPF3 n/a
11 TRCN0000235750 GGCATCGTGATGCGCTATTTA pLKO_005 1494 3UTR 100% 15.000 9.000 N DPF3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001280543.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07202 pDONR223 100% 95.4% 94.2% None (many diffs) n/a
2 TRCN0000473387 GCCCTCCGGGGAGACATTCACATG pLX_317 40.7% 95.4% 94.2% V5 (many diffs) n/a
Download CSV