Transcript: Human NM_001282192.2

Homo sapiens ribonuclease A family member 4 (RNASE4), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
RNASE4 (6038)
Length:
2165
CDS:
321..764

Additional Resources:

NCBI RefSeq record:
NM_001282192.2
NBCI Gene record:
RNASE4 (6038)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001282192.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049798 CCAATGCAAGAACGGCAAGAT pLKO.1 590 CDS 100% 4.950 6.930 N RNASE4 n/a
2 TRCN0000291903 CCAATGCAAGAACGGCAAGAT pLKO_005 590 CDS 100% 4.950 6.930 N RNASE4 n/a
3 TRCN0000049801 GAGCACTAGACGTGTTGTCAT pLKO.1 698 CDS 100% 4.950 6.930 N RNASE4 n/a
4 TRCN0000291906 GAGCACTAGACGTGTTGTCAT pLKO_005 698 CDS 100% 4.950 6.930 N RNASE4 n/a
5 TRCN0000049802 TGATCGCTACTGCAACTTGAT pLKO.1 467 CDS 100% 4.950 3.960 N RNASE4 n/a
6 TRCN0000291905 TGATCGCTACTGCAACTTGAT pLKO_005 467 CDS 100% 4.950 3.960 N RNASE4 n/a
7 TRCN0000049799 CCATGAAGATATCTGGAACAT pLKO.1 542 CDS 100% 4.950 3.465 N RNASE4 n/a
8 TRCN0000291904 CCATGAAGATATCTGGAACAT pLKO_005 542 CDS 100% 4.950 3.465 N RNASE4 n/a
9 TRCN0000049800 GATGATGCAAAGACGGAAGAT pLKO.1 485 CDS 100% 4.950 3.465 N RNASE4 n/a
10 TRCN0000291907 GATGATGCAAAGACGGAAGAT pLKO_005 485 CDS 100% 4.950 3.465 N RNASE4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001282192.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01406 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01406 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000470750 ACTTGGCCGCACACAATTACATGC pLX_317 81.1% 100% 100% V5 n/a
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