Transcript: Mouse NM_001290128.1

Mus musculus predicted gene 21992 (Gm21992), transcript variant 2, mRNA.

Source:
NCBI, updated 2015-07-31
Taxon:
Mus musculus (mouse)
Gene:
Gm21992 (102902673)
Length:
2420
CDS:
127..1137

Additional Resources:

NCBI RefSeq record:
NM_001290128.1
NBCI Gene record:
Gm21992 (102902673)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001290128.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263390 CATGATGCACTTCACTATTTA pLKO_005 2039 3UTR 100% 15.000 7.500 Y Rbm4 n/a
2 TRCN0000263394 TGCAGCTTCTACTTCATATTA pLKO_005 933 CDS 100% 15.000 7.500 Y Rbm4 n/a
3 TRCN0000263391 ACGCCTTACACCATGAGTTAT pLKO_005 646 CDS 100% 13.200 6.600 Y Rbm4 n/a
4 TRCN0000263393 CCTCTCTCGATCCCTACAATA pLKO_005 854 CDS 100% 13.200 6.600 Y Rbm4 n/a
5 TRCN0000338597 GCAGACTTGACCGAGCAATAT pLKO_005 601 CDS 100% 13.200 6.600 Y RBM4 n/a
6 TRCN0000338128 CATCGAGTGTGACGTGGTAAA pLKO_005 441 CDS 100% 10.800 5.400 Y Rbm14 n/a
7 TRCN0000263392 GCTGCCTCTGCGTATAGTAAC pLKO_005 763 CDS 100% 10.800 5.400 Y Rbm4 n/a
8 TRCN0000103961 CCGAGCAATATAATGAGCAAT pLKO.1 611 CDS 100% 4.950 2.475 Y Rbm4 n/a
9 TRCN0000103960 CCTTGTTAAGTTCTTTCTCTT pLKO.1 1274 3UTR 100% 4.950 2.475 Y Rbm4 n/a
10 TRCN0000124341 CTGCATGTACAAGTCAGGAAT pLKO.1 389 CDS 100% 4.950 2.475 Y Rbm14 n/a
11 TRCN0000124340 GCAATGTATCGGCTGCATGTA pLKO.1 377 CDS 100% 4.950 2.475 Y Rbm14 n/a
12 TRCN0000103963 ACCGAGCAATATAATGAGCAA pLKO.1 610 CDS 100% 2.640 1.320 Y Rbm4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001290128.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01382 pDONR223 100% 72.9% 71.1% None (many diffs) n/a
2 ccsbBroad304_01382 pLX_304 0% 72.9% 71.1% V5 (many diffs) n/a
3 TRCN0000467520 CATTGTCTACCGGTTTAACTCAAT pLX_317 39.8% 72.9% 71.1% V5 (many diffs) n/a
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