Transcript: Mouse NM_001291005.1

Mus musculus Kv channel interacting protein 3, calsenilin (Kcnip3), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Kcnip3 (56461)
Length:
2771
CDS:
53..907

Additional Resources:

NCBI RefSeq record:
NM_001291005.1
NBCI Gene record:
Kcnip3 (56461)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001291005.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413876 GCCTATTCCTAGGTCAATAAA pLKO_005 1170 3UTR 100% 15.000 21.000 N Kcnip3 n/a
2 TRCN0000414580 CCTATGGACCCATGCTCTTAG pLKO_005 1323 3UTR 100% 10.800 15.120 N Kcnip3 n/a
3 TRCN0000086199 CCTGATGCGTTGCTGCTTAAT pLKO.1 263 CDS 100% 13.200 10.560 N Kcnip3 n/a
4 TRCN0000086200 GACACCTTCAAACTCATTTAT pLKO.1 470 CDS 100% 15.000 10.500 N Kcnip3 n/a
5 TRCN0000086202 AGACACCTTCAAACTCATTTA pLKO.1 469 CDS 100% 13.200 9.240 N Kcnip3 n/a
6 TRCN0000412595 AGTGGGCCTTCAATCTCTATG pLKO_005 639 CDS 100% 10.800 7.560 N Kcnip3 n/a
7 TRCN0000416570 GAGAGGACCAGGTCTACAAAG pLKO_005 1252 3UTR 100% 10.800 7.560 N Kcnip3 n/a
8 TRCN0000086198 GCCAACATTCTAAAGCACAAA pLKO.1 2001 3UTR 100% 4.950 3.465 N Kcnip3 n/a
9 TRCN0000086201 GTGGAGAGGTTCTTTCAGAAA pLKO.1 779 CDS 100% 4.950 3.465 N Kcnip3 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1079 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001291005.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488498 TACTCGACGCGGATATTTTCAAGC pLX_317 42.5% 78.3% 70.5% V5 (not translated due to prior stop codon) (many diffs) n/a
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