Transcript: Human NM_001291447.2

Homo sapiens spalt like transcription factor 2 (SALL2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-23
Taxon:
Homo sapiens (human)
Gene:
SALL2 (6297)
Length:
3868
CDS:
220..2940

Additional Resources:

NCBI RefSeq record:
NM_001291447.2
NBCI Gene record:
SALL2 (6297)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001291447.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234699 GGGTAATCTGCGTGCACATTT pLKO_005 1821 CDS 100% 13.200 18.480 N SALL2 n/a
2 TRCN0000234697 TGCCAAGTGCTGCGCACAATT pLKO_005 321 CDS 100% 13.200 18.480 N SALL2 n/a
3 TRCN0000234698 ACTCGCATGCAACTAAGTAAG pLKO_005 1444 CDS 100% 10.800 15.120 N SALL2 n/a
4 TRCN0000238794 CCGCTTCTGTGCCAAAGTATT pLKO_005 933 CDS 100% 13.200 10.560 N SALL2 n/a
5 TRCN0000153893 CAATGTCTGTGGAAACCGTTT pLKO.1 1017 CDS 100% 4.050 3.240 N SALL2 n/a
6 TRCN0000152761 GCAGTGGAACCCAAGAATAAA pLKO.1 1354 CDS 100% 15.000 10.500 N SALL2 n/a
7 TRCN0000153534 CCCAGGAGATATTTGGGAAAT pLKO.1 3195 3UTR 100% 10.800 7.560 N SALL2 n/a
8 TRCN0000155756 CAGTGGCTTGCCTTATGGTAT pLKO.1 1149 CDS 100% 4.950 3.465 N SALL2 n/a
9 TRCN0000151157 GAGATGGACAGTAATGAGAAA pLKO.1 2278 CDS 100% 4.950 3.465 N SALL2 n/a
10 TRCN0000153151 GCAATATCAGTGAGAGGTGAT pLKO.1 2191 CDS 100% 4.050 2.835 N SALL2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001291447.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11117 pDONR223 100% 19.6% 15.1% None (many diffs) n/a
2 ccsbBroad304_11117 pLX_304 0% 19.6% 15.1% V5 (many diffs) n/a
3 TRCN0000492012 TGATACCACTGCTATCCAACTCAA pLX_317 59.1% 19.6% 15.1% V5 (many diffs) n/a
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