Construct: ORF ccsbBroad304_11701

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008571.1_s304c1, BRDN0000407726
Derived from:
ccsbBroadEn_11701
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEL1L3 (23231)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11701
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23231 SEL1L3 SEL1L family member 3 NM_001297594.2 99.8% 99.8% 2014_2015delTAinsAT;2850G>A
2 human 23231 SEL1L3 SEL1L family member 3 XM_024453954.1 99.8% 99.8% 2014_2015delTAinsAT;2850G>A
3 human 23231 SEL1L3 SEL1L family member 3 XM_024453953.1 96% 94.8% (many diffs)
4 human 23231 SEL1L3 SEL1L family member 3 NM_001297592.2 89.1% 89.1% 1_354del;2368_2369delTAinsAT;3204G>A
5 human 23231 SEL1L3 SEL1L family member 3 NM_015187.5 86.3% 86.3% 1_459del;2473_2474delTAinsAT;3309G>A
6 human 23231 SEL1L3 SEL1L family member 3 XM_011513819.2 83.1% 82% (many diffs)
7 human 23231 SEL1L3 SEL1L family member 3 XM_024453955.1 68% 68% 1999G>A;2001_2001delAins937
8 human 23231 SEL1L3 SEL1L family member 3 XR_001741182.2 43.4% (many diffs)
9 mouse 231238 Sel1l3 sel-1 suppressor of lin-12-... XM_011240730.1 86.1% 87.2% (many diffs)
10 mouse 231238 Sel1l3 sel-1 suppressor of lin-12-... NM_172710.3 74.2% 75.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3003
ORF length:
2937
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt ttacagagat gattatttca tcagacattc catctctgta tctgcagtga
121tagtacgcgc ctggattact cacaaataca gtggcagaga ctggaatgtt aaatgggagg
181aaaacttgct ccatgctgta gcaaagaatt ataccctcct gcagaccatc ccgccttttg
241aacgcccttt caaagatcat caagtgtgcc ttgagtggaa catgggttat atttggaacc
301ttcgggcaaa caggattcca cagtgtcctc tggaaaatga tgtggttgcc ctgcttggct
361ttccttatgc ctccagtgga gaaaacacag gcattgtcaa gaagttcccg aggtttcgga
421accgagagct ggaggccact cgacgccaga ggatggatta cccagtgttt actgtttcat
481tgtggcttta tttactccat tattgcaagg ccaacctctg tgggattctg tactttgttg
541actctaatga gatgtacggc acaccttctg tatttcttac ggaagagggc tatttgcata
601ttcagatgca tcttgtcaaa ggggaagacc ttgctgtaaa aactaaattc atcatacctt
661tgaaggagtg gtttcgactg gatatctctt ttaacggagg ccagatagta gtaaccacta
721gcattggaca ggatttgaaa agctaccaca atcagaccat tagcttccgg gaggatttcc
781attataatga cacagctggg tacttcatta ttggagggag caggtatgtg gctggcattg
841aagggttttt tggacccctg aagtactatc gccttcgcag tctgcacccc gcccagattt
901ttaatcccct ccttgagaag caacttgctg aacaaatcaa gttatattat gaaaggtgtg
961ctgaggttca agaaatagta tctgtgtatg catctgcagc aaagcacggg ggcgagagac
1021aagaagcatg ccacctccac aactcctacc tggacctcca gcgcaggtat gggagaccct
1081cgatgtgcag agccttcccc tgggagaagg agctgaaaga caaacacccc agcttgttcc
1141aggcattgct ggagatggat ctgctgaccg tgccaaggaa ccaaaatgaa tctgtatcag
1201aaatcggtgg gaagatattt gagaaggctg taaagagact ctctagcatt gatggtcttc
1261accaaattag ctctatcgtc ccctttctga cggattccag ctgctgtgga taccataaag
1321catcctacta ccttgcagtc ttttatgaga ctggattaaa tgttcctcgg gatcagctgc
1381agggcatgtt gtatagtttg gttggaggcc aggggagtga gaggctgtct tcaatgaatc
1441ttgggtataa acactaccag ggtattgaca actaccccct ggactgggaa ctgtcgtatg
1501cctactacag caacattgcc accaagacac cccttgacca gcacacactg caaggagatc
1561aggcatatgt tgaaacaatt agactaaaag atgatgaaat actcaaggta caaaccaaag
1621aagatggaga tgtctttatg tggttgaagc atgaagctac ccgaggcaat gcagcagctc
1681agcaacgatt ggcccagatg ctgttctggg ggcagcaagg tgtggccaag aatcccgaag
1741cagcaattga gtggtacgcc aagggcgccc tggagacgga ggatcctgcg ttaatctatg
1801actatgccat tgtgctattc aagggtcaag gagtaaaaaa gaacagacgg cttgccttag
1861agctgatgaa gaaagcagct tccaagggat tgcatcaggc agtcaatggc ctgggatggt
1921attaccacaa attcaagaaa aattacgcca aagcagcaaa gtactggtta aaagcagaag
1981aaatggggaa cccagatgcg tcatacaatc ttggagtcct gcatttggat ggcatcttcc
2041ctggagttcc tggaaggaat caaactttag ctggtgaaat tttccataag gctgcgcaag
2101gtggacacat ggaagggacc ttgtggtgtt ctctctacta tatcacaggc aacctggaga
2161cattccctag agatcctgag aaagctgttg tatgggcaaa acatgtagct gagaaaaatg
2221gctacttggg ccatgtcatc cgcaaaggcc tcaatgccta cctggaaggt tcatggcatg
2281aagctttgct gtattatgtt ttagcagcag aaactggaat tgaagtgtca cagacaaatt
2341tagcacacat ctgtgaggag aggccagacc tggccaggag atacttgggt gttaactgtg
2401tttggagata ctataatttc tctgtttttc aaatcgatgc tccttccttt gcatatttga
2461agatgggaga cctttactac tatggccacc aaaaccagtc acaagacctg gagttgtctg
2521tgcagatgta cgcccaagcc gccctggatg gagactccca gggatttttt aacctggccc
2581tgctaatcga ggaaggtacg ataatcccac accatatctt ggatttcttg gaaattgact
2641caactctcca ttctaataac atctccattc tccaggaact gtacgaaagg tgctggagcc
2701acagtaacga ggagtccttc agcccctgct ccttggcctg gctttacctg cacttgcggc
2761ttctctgggg tgctatcctg cactcagccc tgatctactt tctgggaacc tttctgctat
2821ccatattgat cgcctggact gtgcagtatt tccagtctgt ctcagcaagc gatccccctc
2881caagaccatc ccaggcctcc ccagacactg ccacatccac tgcaagtcca gctgtgactc
2941cagctgcaga tgcctctgac caagaccagc ccacagtaac taataacccg gagccacgtg
3001ggtgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
3061tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
3121tctggatta

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