Construct: ORF TRCN0000475110

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009279.1_s317c1
Derived from:
ccsbBroadEn_12618
DNA Barcode:
TGCGACTAACCGTGGCAGGCCAGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARMC5 (79798)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000475110
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79798 ARMC5 armadillo repeat containing 5 NM_001105247.2 82.4% 82.4% 1_492del
2 human 79798 ARMC5 armadillo repeat containing 5 NM_001301820.1 79.7% 79.7% 1_588del
3 human 79798 ARMC5 armadillo repeat containing 5 XM_024450449.1 79.7% 79.7% 1_588del
4 human 79798 ARMC5 armadillo repeat containing 5 XM_006721091.3 79.2% 79.2% 1_588del;2093_2110del
5 human 79798 ARMC5 armadillo repeat containing 5 XM_024450448.1 79.2% 79.2% 1_588del;2093_2110del
6 human 79798 ARMC5 armadillo repeat containing 5 NM_001288767.2 74.8% 74.8% 1_777del
7 human 79798 ARMC5 armadillo repeat containing 5 NM_024742.2 56.3% 51.3% (many diffs)
8 mouse 233912 Armc5 armadillo repeat containing 5 NM_146205.2 68.4% 72.3% (many diffs)
9 mouse 233912 Armc5 armadillo repeat containing 5 XM_017322219.1 44.7% 46.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2379
ORF length:
2313
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gacagacagc atccagaacc gaacggcccg tgccctgggg aacttagcca
121tggaacctga gagctgtggg gacatccact gtgctggtgc tgttcccctg cttgtggaga
181gcctgacagc ctgccaggac tcgcagtgcc tacagagcgt ggtgcgtgcc ctccgtaacc
241tggcagactc accccagcac cgcctggcct tggcacagca gggagcagtg cgtccgctgg
301ccgagctcct ggccactgcc ccagatgctg cactgacctt agccctcgtc cgtgccctcc
361tggaactcag ccgaggctgc tcccgggcct gtgctgagca gctaagtctg ggtgggggat
421tgggcccact cgtcagcctg gcttcccacc ccaagcgggc agtacgcgag ggaaccattc
481tgatcctcgc caacctgtgt gcccagggcc tgattcggcc tgcactgggc aatgctggtg
541gcgtggaggt gctggtagat gagctccggc agcgccggga tcctaatgga gctagcccaa
601cctcccagca gcccctggtg cgggctgtgt gcctcctatg tcgtgaggcc atcaaccggg
661cccgactgcg ggatgctggt ggcttggatc tactgatggg cctgctgcgg gaccctcgtg
721caagcgcatg gcaccctcgt attgtggctg cccttgtggg gtttctgtat gacactgggg
781ccctgggccg gctgcaggct ctgggacttg tgcctctcct ggctgggcag ctgtgtggtg
841aggctggtga ggaggaagaa gagggaagag aagctgcttc ctgggacttt cctgaggaga
901ggacccctga gcgggcacag ggtggaagct tccggagcct caggtcgtgg ctgatctccg
961agggctatgc cacaggccct gatgacatct cccccgactg gtctcctgag cagtgtccgc
1021cggagcccat ggagccggcc agccccgccc cgaccccgac ctcgctgcgg gcaccacgca
1081cccaacgcac tccgggccgc agccccgccg ccgccatcga ggagccttgg ggacgcgaag
1141ggccagccct gctgctgctg tcgcgctttt cccaggcccc tgacccaagt ggggcacttg
1201tgaccggccc ggcgctgtac ggcctgctga cctatgtgac cggcgcaccg ggcccgccca
1261gcccacgtgc actgcgcatt ctgtcacgcc tcacctgcaa ccctgcctgc ctcgaggcct
1321tcgtgcgcag ctatggcgcg gcgctgctgc gggcctggct ggtgctgggg gtggcgcctg
1381acgattggcc ggcaccacgt gcccggccca ctctccacag ccggcaccga gagctggggg
1441agaggctact gcagaacctg acggttcagg ctgagtcgcc ctttggggtt ggggccctga
1501cgcacctgct gctctctggg agccctgagg accgagtggc ctgcgcgctg accctgccct
1561tcatctgccg gaagccctct ctgtggcgcc ggctgcttct ggagcagggt ggtctccggc
1621tcctccttgc ggcgctgacc cggccggccc cacacccgct cttcctcttc tttgccgcgg
1681actccctttc ctgcctccaa gacctggtgt ctcccactgt gagcccagct gtcccacagg
1741cagtccccat ggacctagac tcaccttccc cttgcctcta tgaacctctg ctgggcccag
1801cccctgtccc agctcccgac ctgcacttcc tgctggactc aggcctccag ctccctgccc
1861agcgagcggc ctcagccacc gcctcccctt tcttccgggc cctgctgtca ggcagctttg
1921cagaagccca gatggacctg gtgcccctgc gaggtctgtc gcctggtgca gcctggcctg
1981tcctgcatca tttgcatggt tgtcGGGGGT GTGGGGCTGC CCTGGGGCCC GTGCCCCCAC
2041CAGGCCAGCC CCTGCTGGGT TCAGAGGCCG AGGAGGCACT GGAGGCTGCT GGCCGTTTCC
2101TACTGCCTGG GCTGGAGGAG GAGCTGGAAG AGGCCGTGGG CCGCATCCAC CTGGGACCCC
2161AGGGTGGCCC GGAGTCAGTG GGTGAGGTGT TCCGCCTGGG CCGGCCCCGG CTGGCTGCCC
2221ACTGTGCCCG CTGGACACTG GGGTCAGAGC AGTGCCCGAG GAAGCGGGGT CTGGCCCTGG
2281TGGGGCTTGT GGAGGCAGCA GGTGAAGAGG CAGGGCCCCT GACGGAGGCT TTGCTGGCTG
2341TGGTGATGGG GATTGAGTTG GGGGCAAGGG TCCCTGCCTA CCCAACTTTC TTGTACAAAG
2401TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
2461GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
2521ACGATGCGAC TAACCGTGGC AGGCCAGTAC GCGTTAAGTC gacaatcaac ctctggatta
2581caaaatttgt gaaagatt

Download FASTA (ORF) (Full)