Transcript: Human NM_001303.4

Homo sapiens cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 (COX10), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
COX10 (1352)
Length:
2898
CDS:
103..1434

Additional Resources:

NCBI RefSeq record:
NM_001303.4
NBCI Gene record:
COX10 (1352)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001303.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303605 GCGAGCATGTTGTGGTAATTC pLKO_005 1476 3UTR 100% 13.200 18.480 N COX10 n/a
2 TRCN0000034557 GACTCAATAGATGTAGGGAAA pLKO.1 487 CDS 100% 4.050 5.670 N COX10 n/a
3 TRCN0000303537 ATCTTCTCAGGAATGTCAATA pLKO_005 215 CDS 100% 13.200 9.240 N COX10 n/a
4 TRCN0000303603 CTAGAGCCAGACTCAGTAATT pLKO_005 463 CDS 100% 13.200 9.240 N COX10 n/a
5 TRCN0000034556 CAGCCTATCTTTGTCCAGAAA pLKO.1 417 CDS 100% 4.950 3.465 N COX10 n/a
6 TRCN0000034555 GCCAACTCCATCAATCAGTTT pLKO.1 709 CDS 100% 4.950 3.465 N COX10 n/a
7 TRCN0000303538 GTACCACTGCAGCTGGATTTG pLKO_005 614 CDS 100% 0.000 0.000 N COX10 n/a
8 TRCN0000034558 GTGTATGATTTGCCAGGAATT pLKO.1 550 CDS 100% 0.000 0.000 N COX10 n/a
9 TRCN0000299368 GTGTATGATTTGCCAGGAATT pLKO_005 550 CDS 100% 0.000 0.000 N COX10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001303.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06023 pDONR223 100% 99.7% 99.7% None 476G>A;504G>A;699A>G n/a
2 ccsbBroad304_06023 pLX_304 0% 99.7% 99.7% V5 476G>A;504G>A;699A>G n/a
3 TRCN0000474388 ATGATTCAAAATTTCTATGCAGCC pLX_317 40.9% 99.7% 99.7% V5 476G>A;504G>A;699A>G n/a
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