Transcript: Human NM_001308269.2

Homo sapiens zinc finger protein 121 (ZNF121), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
ZNF121 (7675)
Length:
7037
CDS:
262..1434

Additional Resources:

NCBI RefSeq record:
NM_001308269.2
NBCI Gene record:
ZNF121 (7675)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001308269.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000117780 AGAACGTGGATAGGAGACAAA pLKO.1 499 CDS 100% 4.950 6.930 N ZNF121 n/a
2 TRCN0000117778 GCCTTAATGCACACATGGGAA pLKO.1 335 CDS 100% 2.640 2.112 N ZNF121 n/a
3 TRCN0000117779 GCCTTTGTTGATCAGTCACAT pLKO.1 547 CDS 100% 4.950 3.465 N ZNF121 n/a
4 TRCN0000117781 CTGTGTTGAATCAGTGCAGAA pLKO.1 446 CDS 100% 4.050 2.430 N ZNF121 n/a
5 TRCN0000082462 CCTCCCAAAGTGCCAGGATTA pLKO.1 5724 3UTR 100% 10.800 5.400 Y LOC388949 n/a
6 TRCN0000151775 CCCTATGAATGTAAGGAATGT pLKO.1 772 CDS 100% 4.950 2.475 Y ZNF829 n/a
7 TRCN0000117777 CGAAGACATGAAAGAACTCAT pLKO.1 1574 3UTR 100% 4.950 2.475 Y ZNF121 n/a
8 TRCN0000147970 GAATGTAAGGAATGTGGGAAA pLKO.1 778 CDS 100% 4.050 2.025 Y ZNF700 n/a
9 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 1348 CDS 100% 15.000 7.500 Y ZNF443 n/a
10 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 1348 CDS 100% 15.000 7.500 Y Zfp97 n/a
11 TRCN0000128227 CAGGAGAATCACTTGAATCTA pLKO.1 5097 3UTR 100% 5.625 2.813 Y NLRP8 n/a
12 TRCN0000160334 CCTATGAATGTAAGGAATGTA pLKO.1 773 CDS 100% 5.625 2.813 Y ZNF570 n/a
13 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 4928 3UTR 100% 4.950 2.475 Y ERN2 n/a
14 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 4928 3UTR 100% 4.950 2.475 Y P3H4 n/a
15 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 4928 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001308269.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.