Transcript: Mouse NM_001310659.1

Mus musculus insulin-like growth factor binding protein 2 (Igfbp2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-11
Taxon:
Mus musculus (mouse)
Gene:
Igfbp2 (16008)
Length:
933
CDS:
145..621

Additional Resources:

NCBI RefSeq record:
NM_001310659.1
NBCI Gene record:
Igfbp2 (16008)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001310659.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420942 TGTTCCGGGAGAAGGTCAATG pLKO_005 215 CDS 100% 10.800 7.560 N Igfbp2 n/a
2 TRCN0000422736 AGACCAACACTGAGCTCAGAA pLKO_005 739 3UTR 100% 4.950 3.465 N Igfbp2 n/a
3 TRCN0000012860 CGAGTGCCATCTCTTCTACAA pLKO.1 555 CDS 100% 4.950 3.465 N Igfbp2 n/a
4 TRCN0000012858 GAACCTCCCTTGCTTCTGTTA pLKO.1 795 3UTR 100% 4.950 3.465 N Igfbp2 n/a
5 TRCN0000431455 ACAGTGATGACGACCACTCTG pLKO_005 89 5UTR 100% 4.050 2.835 N Igfbp2 n/a
6 TRCN0000012862 CCATGCCCAAAGTGTGCAGTA pLKO.1 600 CDS 100% 4.050 2.835 N Igfbp2 n/a
7 TRCN0000412259 ATGTTGGGAGGTGGTAGCAGT pLKO_005 151 CDS 100% 2.640 1.848 N Igfbp2 n/a
8 TRCN0000012861 CCACGTGGATGGGACCATGAA pLKO.1 129 5UTR 100% 1.650 1.155 N Igfbp2 n/a
9 TRCN0000012859 GCAGTGCAAGATGTCTCTGAA pLKO.1 453 CDS 100% 4.950 2.970 N Igfbp2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001310659.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488558 ATTCACAATAGGCGGCACCCTTGT pLX_317 33% 42.9% 44.2% V5 (not translated due to prior stop codon) (many diffs) n/a
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