Transcript: Human NM_001313932.2

Homo sapiens capping actin protein of muscle Z-line subunit beta (CAPZB), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
CAPZB (832)
Length:
711
CDS:
102..440

Additional Resources:

NCBI RefSeq record:
NM_001313932.2
NBCI Gene record:
CAPZB (832)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001313932.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000029345 CCTATAGGTCACCATGGAGTA pLKO.1 310 CDS 100% 4.050 2.835 N CAPZB n/a
2 TRCN0000029347 GACCAGTATCGAGACCTGTAT pLKO.1 414 CDS 100% 4.950 6.930 N CAPZB n/a
3 TRCN0000318894 GACCAGTATCGAGACCTGTAT pLKO_005 414 CDS 100% 4.950 6.930 N CAPZB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001313932.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00218 pDONR223 100% 41% 40.8% None 331_332insATTTTGAAGGTG;334T>G;336_337ins468 n/a
2 ccsbBroad304_00218 pLX_304 0% 41% 40.8% V5 331_332insATTTTGAAGGTG;334T>G;336_337ins468 n/a
3 TRCN0000472378 GTTACTGCGCTTCTCCCTAGTCGT pLX_317 55.5% 41% 40.8% V5 331_332insATTTTGAAGGTG;334T>G;336_337ins468 n/a
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