Construct: ORF ccsbBroad304_00218

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007838.1_s304c1, BRDN0000408512
Derived from:
ccsbBroadEn_00218
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAPZB (832)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00218
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 832 CAPZB capping actin protein of mu... NM_004930.5 100% 100%
2 human 832 CAPZB capping actin protein of mu... NM_001206540.3 92.5% 90.6% (many diffs)
3 human 832 CAPZB capping actin protein of mu... NM_001282162.2 90.3% 90% 1_85del;88_89delCA
4 human 832 CAPZB capping actin protein of mu... XM_017002428.2 88.2% 86.2% (many diffs)
5 human 832 CAPZB capping actin protein of mu... XM_006710938.4 84.4% 82.2% (many diffs)
6 human 832 CAPZB capping actin protein of mu... XM_011542228.3 83.8% 81.6% (many diffs)
7 human 832 CAPZB capping actin protein of mu... NM_001206541.3 78.4% 73% (many diffs)
8 human 832 CAPZB capping actin protein of mu... XM_024450096.1 68% 68% 0_1ins261
9 human 832 CAPZB capping actin protein of mu... XM_024450097.1 68% 68% 0_1ins261
10 human 832 CAPZB capping actin protein of mu... XM_011542229.3 61.6% 59.2% (many diffs)
11 human 832 CAPZB capping actin protein of mu... XM_011542230.3 61.6% 59.2% (many diffs)
12 human 832 CAPZB capping actin protein of mu... NM_001313932.2 41% 40.8% 331_332insATTTTGAAGGTG;334T>G;336_337ins468
13 human 832 CAPZB capping actin protein of mu... XM_017002429.2 37% 36.5% (many diffs)
14 human 832 CAPZB capping actin protein of mu... XM_017002430.2 36.5% 36.2% 1_85del;88_89delCA;417_418ins486
15 mouse 12345 Capzb capping protein (actin fila... NM_009798.4 92.7% 100% (many diffs)
16 mouse 12345 Capzb capping protein (actin fila... NM_001037761.2 86.6% 90.6% (many diffs)
17 mouse 12345 Capzb capping protein (actin fila... NM_001271405.1 83.6% 90% (many diffs)
18 mouse 12345 Capzb capping protein (actin fila... XM_006538504.3 78.3% 81.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
885
ORF length:
816
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gagtgatcag cagctggact gtgccttgga cctaatgagg cgcctgcctc
121cccagcaaat cgagaaaaac ctcagcgacc tgatcgacct ggtccccagt ctatgtgagg
181atctcctgtc ttctgttgac cagccactga aaattgccag agacaaggtg gtgggaaagg
241attacctttt gtgtgactac aacagagatg gggactccta taggtcacca tggagtaaca
301agtatgaccc tcccttggag gatggggcca tgccgtcagc tcggctgaga aagctggagg
361tggaagccaa caatgccttt gaccagtatc gagacctgta ttttgaaggt ggcgtctcat
421ctgtctacct ctgggatctg gatcatggct ttgctggagt gatcctcata aagaaggctg
481gagatggatc aaagaagatc aaaggctgct gggattccat ccacgtggta gaagtgcagg
541agaaatccag cggtcgcacc gcccattaca agttgacctc cacggtgatg ctgtggctgc
601agaccaacaa atctggctct ggcaccatga acctcggagg cagccttacc agacagatgg
661agaaggatga aactgtgagt gactgctccc cacacatagc caacatcggg cgcctggtag
721aggacatgga aaataaaatc agaagtacgc tgaacgagat ctactttgga aaaacaaagg
781atatcgtcaa tgggctgagg tctgtgcaga cttttgcaga caaatcaaaa caagaagctc
841tgaagaatga cctggtggag gctttgaaga gaaagcagca atgcttgcca actttcttgt
901acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
961gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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