Transcript: Mouse NM_001316715.1

Mus musculus nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 (Nudt16l1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Nudt16l1 (66911)
Length:
1369
CDS:
31..486

Additional Resources:

NCBI RefSeq record:
NM_001316715.1
NBCI Gene record:
Nudt16l1 (66911)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001316715.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256001 ACGCCTTACCGAAGCTGATTA pLKO_005 297 CDS 100% 13.200 18.480 N Nudt16l1 n/a
2 TRCN0000256000 TAGGCGGCTTTCCTAACTTTC pLKO_005 566 3UTR 100% 10.800 15.120 N Nudt16l1 n/a
3 TRCN0000256002 TTCATGCCACGCCATGCTATA pLKO_005 108 CDS 100% 10.800 15.120 N Nudt16l1 n/a
4 TRCN0000255999 TGCCCTTAAGGTACTCAACAT pLKO_005 630 3UTR 100% 4.950 3.960 N Nudt16l1 n/a
5 TRCN0000198666 CCTTACCGAAGCTGATTACCT pLKO.1 300 CDS 100% 3.000 2.400 N Nudt16l1 n/a
6 TRCN0000256003 CGTTAGACCAACCCTTCTTTC pLKO_005 1120 3UTR 100% 10.800 7.560 N Nudt16l1 n/a
7 TRCN0000176594 CTGCCAAATATCAACTTCTAT pLKO.1 608 3UTR 100% 5.625 3.938 N Nudt16l1 n/a
8 TRCN0000177994 GCCTTCTAGTGTGTTTGCTTT pLKO.1 815 3UTR 100% 4.950 3.465 N Nudt16l1 n/a
9 TRCN0000181288 CATGCGTTTCTCAGTGCTGAT pLKO.1 165 CDS 100% 4.050 2.835 N Nudt16l1 n/a
10 TRCN0000181837 GAGAAGCAGAAGAAGGCTCTA pLKO.1 694 3UTR 100% 4.050 2.835 N Nudt16l1 n/a
11 TRCN0000181289 CCACTTGGTTGGAACACAGAT pLKO.1 1059 3UTR 100% 4.950 2.970 N Nudt16l1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001316715.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04371 pDONR223 100% 61.7% 66.3% None (many diffs) n/a
2 ccsbBroad304_04371 pLX_304 0% 61.7% 66.3% V5 (many diffs) n/a
3 TRCN0000474867 TGCCAAACACAACCTCCGGGTTAA pLX_317 80.5% 61.7% 66.3% V5 (many diffs) n/a
Download CSV