Transcript: Human NM_001321065.2

Homo sapiens apolipoprotein C1 (APOC1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
APOC1 (341)
Length:
553
CDS:
186..437

Additional Resources:

NCBI RefSeq record:
NM_001321065.2
NBCI Gene record:
APOC1 (341)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001321065.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163118 GAACTCATCAGCCGCATCAAA pLKO.1 333 CDS 100% 5.625 3.938 N APOC1 n/a
2 TRCN0000163095 GCTGAAGGAGTTTGGAAACAC pLKO.1 293 CDS 100% 4.950 3.465 N APOC1 n/a
3 TRCN0000163620 GTTTGGAAACACACTGGAGGA pLKO.1 302 CDS 100% 2.160 1.512 N APOC1 n/a
4 TRCN0000159084 GCATCAAACAGAGTGAACTTT pLKO.1 346 CDS 100% 5.625 3.375 N APOC1 n/a
5 TRCN0000162089 CGCATCAAACAGAGTGAACTT pLKO.1 345 CDS 100% 4.950 2.970 N APOC1 n/a
6 TRCN0000161999 GAGTGAACTTTCTGCCAAGAT pLKO.1 356 CDS 100% 4.950 2.970 N APOC1 n/a
7 TRCN0000160151 CAGAGACATTTCAGAAAGTGA pLKO.1 391 CDS 100% 3.000 1.800 N APOC1 n/a
8 TRCN0000160625 CATTTCAGAAAGTGAAGGAGA pLKO.1 397 CDS 100% 2.640 1.584 N APOC1 n/a
9 TRCN0000164373 CCTTGGATAAGCTGAAGGAGT pLKO.1 283 CDS 100% 2.640 1.584 N APOC1 n/a
10 TRCN0000158986 GACATTTCAGAAAGTGAAGGA pLKO.1 395 CDS 100% 2.640 1.584 N APOC1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001321065.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05837 pDONR223 100% 99.5% 92.7% None 232A>T n/a
2 ccsbBroad304_05837 pLX_304 0% 99.5% 92.7% V5 (not translated due to prior stop codon) 232A>T n/a
3 TRCN0000473785 AAGGACACTACGCGCTAAATACTA pLX_317 100% 99.5% 92.7% V5 (not translated due to prior stop codon) 232A>T n/a
Download CSV