Transcript: Human NM_001321690.1

Homo sapiens basic leucine zipper and W2 domains 1 (BZW1), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
BZW1 (9689)
Length:
3099
CDS:
150..1409

Additional Resources:

NCBI RefSeq record:
NM_001321690.1
NBCI Gene record:
BZW1 (9689)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001321690.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420326 ACTGAAACCGGTACTGATTTG pLKO_005 270 CDS 100% 10.800 15.120 N BZW1 n/a
2 TRCN0000436385 ACTTGATTACCGTCGATATGC pLKO_005 329 CDS 100% 4.950 6.930 N BZW1 n/a
3 TRCN0000148768 CAAGTTAATCAGGCGCTACAA pLKO.1 494 CDS 100% 4.950 6.930 N BZW1 n/a
4 TRCN0000424925 GTACAGATGTCTGCGTGTTTG pLKO_005 424 CDS 100% 10.800 8.640 N BZW1 n/a
5 TRCN0000433363 CTCAGTTTCAAGACTGTATTA pLKO_005 238 CDS 100% 13.200 9.240 N BZW1 n/a
6 TRCN0000425630 ACTGTATTATTCAAGGCTTAA pLKO_005 250 CDS 100% 10.800 7.560 N BZW1 n/a
7 TRCN0000148891 CCTGCCAATAAGCAAAGTGTT pLKO.1 807 CDS 100% 4.950 3.465 N BZW1 n/a
8 TRCN0000149696 GATGACATGATGCGTACAGAT pLKO.1 411 CDS 100% 4.950 3.465 N BZW1 n/a
9 TRCN0000147346 GCAGAAACACTCTTTGACATT pLKO.1 348 CDS 100% 4.950 3.465 N BZW1 n/a
10 TRCN0000147812 GCAGTAGCTAAGTTTCTTGAT pLKO.1 294 CDS 100% 4.950 3.465 N BZW1 n/a
11 TRCN0000147660 GCCAATAAGCAAAGTGTTGAA pLKO.1 810 CDS 100% 4.950 3.465 N BZW1 n/a
12 TRCN0000437819 TGCGTGTTTGCAGCCCAAGAA pLKO_005 435 CDS 100% 4.950 3.465 N BZW1 n/a
13 TRCN0000429223 TGGTACACTGGCAGATGACAT pLKO_005 398 CDS 100% 4.950 3.465 N BZW1 n/a
14 TRCN0000096898 GACTGTATTATTCAAGGCTTA pLKO.1 249 CDS 100% 4.050 2.835 N Bzw1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001321690.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11404 pDONR223 100% 99.9% 100% None 415T>C n/a
2 ccsbBroad304_11404 pLX_304 0% 99.9% 100% V5 415T>C n/a
3 TRCN0000469255 GCAGAAGTTCGCACTTAGGCTCTG pLX_317 39.7% 99.9% 100% V5 415T>C n/a
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