Transcript: Human NM_001321760.2

Homo sapiens chromosome 15 open reading frame 41 (C15orf41), transcript variant 9, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
C15orf41 (84529)
Length:
2766
CDS:
236..862

Additional Resources:

NCBI RefSeq record:
NM_001321760.2
NBCI Gene record:
C15orf41 (84529)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001321760.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000167855 GCGAAACATCAGTAAGTTAAT pLKO.1 2073 3UTR 100% 13.200 18.480 N C15orf41 n/a
2 TRCN0000167474 GTCATCTATTGGTATGGATTT pLKO.1 862 CDS 100% 10.800 15.120 N C15orf41 n/a
3 TRCN0000173074 CCCACGAACATTGTCACCTTA pLKO.1 937 3UTR 100% 4.950 6.930 N C15orf41 n/a
4 TRCN0000365139 TCCACCCTCCAAGTCTATTAT pLKO_005 577 CDS 100% 15.000 10.500 N C15orf41 n/a
5 TRCN0000376573 TCATCTATTGGTATGGATTTA pLKO_005 863 CDS 100% 13.200 9.240 N C15orf41 n/a
6 TRCN0000370259 TGCATTACCATCGTGGAATAA pLKO_005 1437 3UTR 100% 13.200 9.240 N C15orf41 n/a
7 TRCN0000370260 CCAGATGGAGTTCTAGCAAAT pLKO_005 629 CDS 100% 10.800 7.560 N C15orf41 n/a
8 TRCN0000172613 GCATTGTGAACGACTGCTGTT pLKO.1 663 CDS 100% 4.050 2.835 N C15orf41 n/a
9 TRCN0000377521 TACCGAATCACCCTCTTATTT pLKO_005 1342 3UTR 100% 0.000 0.000 N C15orf41 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2560 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001321760.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04397 pDONR223 100% 38.6% 37.7% None (many diffs) n/a
2 ccsbBroad304_04397 pLX_304 0% 38.6% 37.7% V5 (many diffs) n/a
3 TRCN0000468087 TTTTTATCTTACACCTCATACCGT pLX_317 82.7% 38.6% 37.7% V5 (many diffs) n/a
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