Construct: ORF TRCN0000468087

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014040.1_s317c1
Derived from:
ccsbBroadEn_04397
DNA Barcode:
TTTTTATCTTACACCTCATACCGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C15orf41 (84529)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468087
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84529 C15orf41 chromosome 15 open reading ... NM_001290232.2 100% 100%
2 human 84529 C15orf41 chromosome 15 open reading ... NM_001321756.2 100% 100%
3 human 84529 C15orf41 chromosome 15 open reading ... NM_032499.6 100% 100%
4 human 84529 C15orf41 chromosome 15 open reading ... XM_024450088.1 100% 100%
5 human 84529 C15orf41 chromosome 15 open reading ... NM_001321757.2 86.3% 86.3% 0_1ins75
6 human 84529 C15orf41 chromosome 15 open reading ... NM_001321758.2 75% 75% 1_183del
7 human 84529 C15orf41 chromosome 15 open reading ... XM_017022676.1 65.8% 41.2% (many diffs)
8 human 84529 C15orf41 chromosome 15 open reading ... XM_017022677.1 65.8% 41.2% (many diffs)
9 human 84529 C15orf41 chromosome 15 open reading ... NM_001130010.3 65.1% 65.1% 1_294del
10 human 84529 C15orf41 chromosome 15 open reading ... NM_001321759.2 65.1% 65.1% 1_294del
11 human 84529 C15orf41 chromosome 15 open reading ... NM_001321761.2 63.7% 63.7% 1_294del;610_627del
12 human 84529 C15orf41 chromosome 15 open reading ... NM_001290233.2 54.3% 50.6% (many diffs)
13 human 84529 C15orf41 chromosome 15 open reading ... XR_931921.1 41.4% 1_544del;965_1100del;1189_1190ins40
14 human 84529 C15orf41 chromosome 15 open reading ... NM_001321760.2 38.6% 37.7% (many diffs)
15 human 84529 C15orf41 chromosome 15 open reading ... XR_931924.1 16.5% 1_544del;726_1556del;1925_3308del
16 human 84529 C15orf41 chromosome 15 open reading ... XR_931922.1 16.4% 1_544del;726_1582del;1951_3334del
17 mouse 399568 BC052040 cDNA sequence BC052040 NM_207264.4 59.1% 61.5% (many diffs)
18 mouse 399568 BC052040 cDNA sequence BC052040 NM_001145898.1 57.9% 60.2% (many diffs)
19 mouse 399568 BC052040 cDNA sequence BC052040 XM_017319081.1 50.8% 44.8% (many diffs)
20 mouse 399568 BC052040 cDNA sequence BC052040 XM_017319079.1 48% 38.9% (many diffs)
21 mouse 399568 BC052040 cDNA sequence BC052040 XM_017319080.1 48% 38.9% (many diffs)
22 mouse 399568 BC052040 cDNA sequence BC052040 XM_006499845.3 46.3% 37.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
615
ORF length:
549
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tcggcttata ctggagaggt ttctacagga acacgaggaa actccaccct
121ccaagtctat tataaatagt atgctacggg acccTTCTCA GATTCCAGAT GGAGTTCTAG
181CAAATCAGGT CTATCAGTGC ATTGTGAACG ACTGCTGTTA CGGACCACTA GTGGACTGCA
241TCAAGCATGC CATTGGTCAT GAGCATGAGG TCCTGCTGAG AGACTTGCTT CTAGAGAAAA
301ACCTGTCCTT CCTAGATGAA GATCAGCTTC GTGCAAAGGG TTATGACAAA ACACCAGACT
361TCATTTTACA AGTACCAGTT GCTGTAGAAG GGCACATAAT TCACTGGATT GAAAGCAAAG
421CCTCATTTGG TGATGAATGT AGCCACCACG CCTACCTGCA TGACCAGTTC TGGAGCTACT
481GGAATAGATT TGGGCCAGGC TTAGTCATCT ATTGGTATGG ATTTATCCAG GAGCTGGACT
541GCAACCGGGA AAGGGGCATC CTGCTCAAAG CCTGTTTCCC CACGAACATT GTCACCTTAT
601GCCACAGCAT AGCTTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
661CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
721TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TTTTTATCTT ACACCTCATA
781CCGTACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)