Transcript: Human NM_001330670.2

Homo sapiens oxidoreductase NAD binding domain containing 1 (OXNAD1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-02-28
Taxon:
Homo sapiens (human)
Gene:
OXNAD1 (92106)
Length:
4090
CDS:
549..1541

Additional Resources:

NCBI RefSeq record:
NM_001330670.2
NBCI Gene record:
OXNAD1 (92106)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001330670.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235143 ATGAGTGTGTTGTCGTTATTA pLKO_005 3854 3UTR 100% 15.000 21.000 N OXNAD1 n/a
2 TRCN0000235140 TTTGCGCCACCTTACTCTAAC pLKO_005 698 CDS 100% 10.800 15.120 N OXNAD1 n/a
3 TRCN0000064449 CGCTTGCTTGTTGCTGATCAA pLKO.1 846 CDS 100% 4.950 6.930 N OXNAD1 n/a
4 TRCN0000064448 CCTTACTCTAACCAGCATAAT pLKO.1 707 CDS 100% 13.200 10.560 N OXNAD1 n/a
5 TRCN0000235139 TCTGTTGGAGCCATCCGTATT pLKO_005 645 CDS 100% 10.800 8.640 N OXNAD1 n/a
6 TRCN0000235142 AGGAGATAAGAGATCATATTT pLKO_005 1405 CDS 100% 15.000 10.500 N OXNAD1 n/a
7 TRCN0000235141 TGCAGGAGGAGTCGGAATTAA pLKO_005 1127 CDS 100% 15.000 10.500 N OXNAD1 n/a
8 TRCN0000064452 GCCAGTGGGTTGATTTCTTTA pLKO.1 886 CDS 100% 13.200 9.240 N OXNAD1 n/a
9 TRCN0000064451 AGAAGGAGATAAGAGATCATA pLKO.1 1402 CDS 100% 5.625 3.938 N OXNAD1 n/a
10 TRCN0000064450 GTCGGAATTAACCCTCTGCTT pLKO.1 1137 CDS 100% 2.640 1.848 N OXNAD1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001330670.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04569 pDONR223 100% 94.5% 94.5% None 1_54del n/a
2 ccsbBroad304_04569 pLX_304 0% 94.5% 94.5% V5 1_54del n/a
3 TRCN0000466557 GCGAAACTAATGCCATTTAAGAGA pLX_317 40.2% 94.5% 94.5% V5 1_54del n/a
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