Transcript: Human NM_001346300.1

Homo sapiens syntaxin 18 (STX18), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
STX18 (53407)
Length:
1916
CDS:
75..839

Additional Resources:

NCBI RefSeq record:
NM_001346300.1
NBCI Gene record:
STX18 (53407)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001346300.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000382254 GACATAAGAGAGGCCATTAAA pLKO_005 732 CDS 100% 15.000 21.000 N STX18 n/a
2 TRCN0000379402 GCAAAGGCGAAGATGAGTTAT pLKO_005 493 CDS 100% 13.200 18.480 N STX18 n/a
3 TRCN0000137053 CCTAATTGTCTCAGGGTTCAA pLKO.1 1180 3UTR 100% 4.950 6.930 N STX18 n/a
4 TRCN0000319349 CCTAATTGTCTCAGGGTTCAA pLKO_005 1180 3UTR 100% 4.950 6.930 N STX18 n/a
5 TRCN0000380615 ACAGAGAGCCATCCGAGTTAA pLKO_005 284 CDS 100% 13.200 9.240 N STX18 n/a
6 TRCN0000134674 GCGACTAATTGGTGAAATGAA pLKO.1 551 CDS 100% 5.625 3.938 N STX18 n/a
7 TRCN0000319348 GCGACTAATTGGTGAAATGAA pLKO_005 551 CDS 100% 5.625 3.938 N STX18 n/a
8 TRCN0000381339 GACCAGGATGCCCAGATATTC pLKO_005 120 CDS 100% 13.200 7.920 N STX18 n/a
9 TRCN0000167407 GTCAACGAATACACAGACTTA pLKO.1 1312 3UTR 100% 4.950 2.970 N STX18 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001346300.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08349 pDONR223 100% 75.7% 75.8% None 0_1ins243;262C>T n/a
2 ccsbBroad304_08349 pLX_304 0% 75.7% 75.8% V5 0_1ins243;262C>T n/a
3 TRCN0000471910 TACCTATGTTCTCCAGCTTGTACC pLX_317 36.2% 75.7% 75.8% V5 0_1ins243;262C>T n/a
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