Construct: ORF ccsbBroadEn_08349

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003440.1_s300c1, BRDN0000385881
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STX18 (53407)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 53407 STX18 syntaxin 18 NM_016930.4 99.9% 100% 505C>T
2 human 53407 STX18 syntaxin 18 NM_001346281.2 89.3% 69.9% 498_550del;558C>T;754_755ins59
3 human 53407 STX18 syntaxin 18 NM_001346282.2 75.7% 75.8% 0_1ins243;262C>T
4 human 53407 STX18 syntaxin 18 NM_001346300.1 75.7% 75.8% 0_1ins243;262C>T
5 human 53407 STX18 syntaxin 18 NR_144414.2 43.7% (many diffs)
6 mouse 71116 Stx18 syntaxin 18 NM_026959.3 88.5% 92.5% (many diffs)
7 mouse 71116 Stx18 syntaxin 18 NM_001289536.1 81.4% 85% (many diffs)
8 mouse 71116 Stx18 syntaxin 18 NM_001289535.1 80.6% 83.2% (many diffs)
9 mouse 71116 Stx18 syntaxin 18 XM_006504111.3 74.1% 71.3% (many diffs)
10 mouse 71116 Stx18 syntaxin 18 XM_006504112.3 66.6% 68.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGTGGACATC ACGCTGCTAT TCCGGGCCAG CGTCAAGACC GTGAAGACGC
121GGAACAAGGC GCTGGGAGTG GCGGTGGGCG GCGGGGTCGA TGGCAGCCGG GACGAGCTGT
181TCCGCCGGAG CCCCCGGCCC AAGGGCGACT TCTCCAGCCG GGCCCGCGAA GTGATTTCTC
241ACATTGGCAA ACTGAGAGAT TTTCTTCTGG AACACAGGAA AGATTATATT AATGCTTATA
301GCCATACCAT GTCTGAATAT GGGAGGATGA CAGACACAGA ACGAGACCAG ATAGACCAGG
361ATGCCCAGAT ATTCATGAGG ACCTGTTCAG AAGCAATTCA GCAACTACGA ACAGAAGCTC
421ACAAGGAGAT ACATTCCCAG CAAGTGAAGG AGCACAGGAC CGCTGTTTTG GATTTCATTG
481AAGATTACTT GAAAAGAGTA TGTAAACTTT ACTCAGAACA GAGAGCCATC CGAGTTAAAA
541GAGTGGTGGA TAAGAAAAGA TTATCTAAGT TGGAACCAGA ACCAAATACA AAGACAAGAG
601AATCCACATC TTCTGAGAAA GTTTCACAGA GTCCTTCAAA AGACTCTGAA GAAAACCCTG
661CCACTGAAGA ACGTCCAGAA AAAATTTTGG CTGAAACACA ACCTGAATTG GGAACGTGGG
721GAGATGGCAA AGGCGAAGAT GAGTTATCCC CAGAAGAAAT ACAAATGTTT GAACAGGAAA
781ATCAGCGACT AATTGGTGAA ATGAACAGCT TGTTTGATGA AGTGAGGCAA ATCGAAGGGA
841GAGTGGTTGA GATTTCCAGA CTCCAAGAGA TATTCACGGA AAAGGTTTTG CAACAGGAAG
901CTGAGATTGA CAGCATTCAC CAGTTAGTTG TGGGGGCAAC TGAAAATATC AAGGAAGGCA
961ACGAAGACAT AAGAGAGGCC ATTAAAAACA ACGCTGGCTT CCGCGTGTGG ATCCTCTTCT
1021TCCTCGTGAT GTGCTCCTTC TCCTTGCTCT TCCTCGACTG GTACGACAGC TACCCAACTT
1081TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)