Transcript: Human NM_001346810.2

Homo sapiens DLG associated protein 2 (DLGAP2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
DLGAP2 (9228)
Length:
10418
CDS:
181..3348

Additional Resources:

NCBI RefSeq record:
NM_001346810.2
NBCI Gene record:
DLGAP2 (9228)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001346810.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047168 GCTCAACGACTGGAAGATGAT pLKO.1 3090 CDS 100% 4.950 6.930 N DLGAP2 n/a
2 TRCN0000047170 TGACGAATGTATTCCCATGAT pLKO.1 1929 CDS 100% 4.950 6.930 N DLGAP2 n/a
3 TRCN0000413326 AGCTGTCTCATATACAAATTA pLKO_005 1989 CDS 100% 15.000 10.500 N DLGAP2 n/a
4 TRCN0000427239 GAGGTAAGAATAACAAGTAAC pLKO_005 3720 3UTR 100% 10.800 7.560 N DLGAP2 n/a
5 TRCN0000438089 GGCGGAGATCAATGGGCAATT pLKO_005 1779 CDS 100% 10.800 7.560 N DLGAP2 n/a
6 TRCN0000047171 TCGGAGGAAATTCTCGGTAAA pLKO.1 2875 CDS 100% 10.800 7.560 N DLGAP2 n/a
7 TRCN0000421804 ACATCACCAAAGTCGGCAATC pLKO_005 1546 CDS 100% 6.000 4.200 N DLGAP2 n/a
8 TRCN0000047169 GAGAATGAGAAGTGGGAGTTA pLKO.1 1473 CDS 100% 4.950 3.465 N DLGAP2 n/a
9 TRCN0000047172 GAGTCCGTCTTCAGTGAAGTT pLKO.1 1813 CDS 100% 4.950 3.465 N DLGAP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001346810.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02114 pDONR223 100% 92.4% 92.4% None 1_240del n/a
2 ccsbBroad304_02114 pLX_304 0% 92.4% 92.4% V5 1_240del n/a
3 TRCN0000478929 GGTGAATCGTCTTCGATGACGGTC pLX_317 9.7% 92.4% 92.4% V5 1_240del n/a
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