Transcript: Human NM_001347700.1

Homo sapiens olfactomedin like 2B (OLFML2B), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
OLFML2B (25903)
Length:
3802
CDS:
1036..3294

Additional Resources:

NCBI RefSeq record:
NM_001347700.1
NBCI Gene record:
OLFML2B (25903)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001347700.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219026 ATTCGAACCGAGATGAATAAG pLKO_005 1639 CDS 100% 13.200 18.480 N OLFML2B n/a
2 TRCN0000229966 GATTTACGTAACCAACTATTA pLKO_005 2622 CDS 100% 13.200 18.480 N OLFML2B n/a
3 TRCN0000229967 AGATCAATCCATACGTGTATG pLKO_005 3465 3UTR 100% 10.800 15.120 N OLFML2B n/a
4 TRCN0000115940 CGGTGACAATGGAGTGGATTT pLKO.1 2007 CDS 100% 10.800 15.120 N OLFML2B n/a
5 TRCN0000115939 CCAGGTCACTTACCATGTCAT pLKO.1 3261 CDS 100% 4.950 6.930 N OLFML2B n/a
6 TRCN0000229965 TGAAGCTCTCCACAATCATAG pLKO_005 1469 CDS 100% 10.800 7.560 N OLFML2B n/a
7 TRCN0000115937 GAGGCAAGAAAGAAGTGCTAT pLKO.1 3665 3UTR 100% 4.950 3.465 N OLFML2B n/a
8 TRCN0000115941 CGAGATGAATAAGCGAGGCAA pLKO.1 1647 CDS 100% 2.640 1.848 N OLFML2B n/a
9 TRCN0000229964 ATGCCTGCCAGAGGATCAATG pLKO_005 1295 CDS 100% 10.800 6.480 N OLFML2B n/a
10 TRCN0000322497 ACGTAACCAACTATTACTATG pLKO_005 2627 CDS 100% 10.800 8.640 N Olfml2b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001347700.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02881 pDONR223 100% 99.6% 99.7% None 576T>C;722_727delAGGAGC n/a
2 ccsbBroad304_02881 pLX_304 0% 99.6% 99.7% V5 576T>C;722_727delAGGAGC n/a
3 TRCN0000470914 CGCTCAGCAAGTTGCCGCTCGAGA pLX_317 16.5% 99.6% 99.7% V5 576T>C;722_727delAGGAGC n/a
4 TRCN0000487866 GTATATGCGCCTCCTCATTGTCAA pLX_317 18.4% 54.3% 54.2% V5 (not translated due to prior stop codon) 1_1029del;1414T>C n/a
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