Transcript: Human NM_001350121.1

Homo sapiens semaphorin 3C (SEMA3C), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
SEMA3C (10512)
Length:
5278
CDS:
825..2906

Additional Resources:

NCBI RefSeq record:
NM_001350121.1
NBCI Gene record:
SEMA3C (10512)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001350121.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000058131 CCTATGTTTGTAGATGCACAT pLKO.1 1311 CDS 100% 4.050 5.670 N SEMA3C n/a
2 TRCN0000290077 CCTATGTTTGTAGATGCACAT pLKO_005 1311 CDS 100% 4.050 5.670 N SEMA3C n/a
3 TRCN0000058128 GCCCTCATCAATAGTCGGAAA pLKO.1 2850 CDS 100% 4.050 5.670 N SEMA3C n/a
4 TRCN0000290079 GCCCTCATCAATAGTCGGAAA pLKO_005 2850 CDS 100% 4.050 5.670 N SEMA3C n/a
5 TRCN0000058129 CGTGTAATTCAGACTTTCAAT pLKO.1 999 CDS 100% 5.625 3.938 N SEMA3C n/a
6 TRCN0000290078 CGTGTAATTCAGACTTTCAAT pLKO_005 999 CDS 100% 5.625 3.938 N SEMA3C n/a
7 TRCN0000058130 GCCAAGATCAACTTCAAAGTT pLKO.1 2613 CDS 100% 5.625 3.938 N SEMA3C n/a
8 TRCN0000290011 GCCAAGATCAACTTCAAAGTT pLKO_005 2613 CDS 100% 5.625 3.938 N SEMA3C n/a
9 TRCN0000058132 GCATCTACAATCAAAGTTGAA pLKO.1 927 CDS 100% 4.950 3.465 N SEMA3C n/a
10 TRCN0000290076 GCATCTACAATCAAAGTTGAA pLKO_005 927 CDS 100% 4.950 3.465 N SEMA3C n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001350121.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07625 pDONR223 100% 92% 92.2% None (many diffs) n/a
2 ccsbBroad304_07625 pLX_304 0% 92% 92.2% V5 (many diffs) n/a
3 TRCN0000473430 AGACATCTAGTTTTCCTGGCCAAG pLX_317 11.2% 92% 92.2% V5 (many diffs) n/a
Download CSV