Construct: ORF TRCN0000467154

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016903.1_s317c1
Derived from:
ccsbBroadEn_12683
DNA Barcode:
ATCAGTGCCACCCTGGCCTAATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARMC9 (80210)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467154
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80210 ARMC9 armadillo repeat containing 9 NM_001291656.2 76.1% 76.2% (many diffs)
2 human 80210 ARMC9 armadillo repeat containing 9 NM_001352755.2 76.1% 76.2% (many diffs)
3 human 80210 ARMC9 armadillo repeat containing 9 NM_001352756.2 76.1% 76.2% (many diffs)
4 human 80210 ARMC9 armadillo repeat containing 9 NM_025139.6 76.1% 76.2% (many diffs)
5 human 80210 ARMC9 armadillo repeat containing 9 NM_001352757.2 71.2% 71.2% (many diffs)
6 human 80210 ARMC9 armadillo repeat containing 9 NM_001352758.2 71.2% 71.2% (many diffs)
7 human 80210 ARMC9 armadillo repeat containing 9 NM_001352759.2 71% 70.9% 1_471del;538_539delATinsGA;1773_1774ins105
8 human 80210 ARMC9 armadillo repeat containing 9 XM_011511914.2 70.2% 70.3% (many diffs)
9 human 80210 ARMC9 armadillo repeat containing 9 XM_011511915.2 67.2% 65.8% (many diffs)
10 human 80210 ARMC9 armadillo repeat containing 9 XM_011511916.2 66.4% 64.1% (many diffs)
11 human 80210 ARMC9 armadillo repeat containing 9 XM_011511913.2 66.3% 62.6% (many diffs)
12 human 80210 ARMC9 armadillo repeat containing 9 XM_017005025.1 63.4% 59.9% (many diffs)
13 human 80210 ARMC9 armadillo repeat containing 9 NM_001271466.4 61.9% 61.9% (many diffs)
14 human 80210 ARMC9 armadillo repeat containing 9 NM_001352754.2 61.9% 61.9% (many diffs)
15 human 80210 ARMC9 armadillo repeat containing 9 XM_011511910.1 61.9% 61.9% (many diffs)
16 human 80210 ARMC9 armadillo repeat containing 9 XM_011511912.1 61.7% 58.4% (many diffs)
17 human 80210 ARMC9 armadillo repeat containing 9 XM_017005022.1 60.9% 61% (many diffs)
18 human 80210 ARMC9 armadillo repeat containing 9 XM_017005021.1 60.8% 60.8% (many diffs)
19 human 80210 ARMC9 armadillo repeat containing 9 XM_011511909.2 60.7% 60.7% (many diffs)
20 human 80210 ARMC9 armadillo repeat containing 9 XM_011511908.2 60.6% 60.7% (many diffs)
21 human 80210 ARMC9 armadillo repeat containing 9 XM_017005024.1 56.7% 56.7% (many diffs)
22 human 80210 ARMC9 armadillo repeat containing 9 XR_923031.1 56% (many diffs)
23 human 80210 ARMC9 armadillo repeat containing 9 XM_011511906.1 53.2% 50.4% (many diffs)
24 human 80210 ARMC9 armadillo repeat containing 9 XM_011511905.1 53.1% 50.3% (many diffs)
25 human 80210 ARMC9 armadillo repeat containing 9 XM_011511907.1 49.6% 46.8% (many diffs)
26 human 80210 ARMC9 armadillo repeat containing 9 NR_148040.2 42.5% (many diffs)
27 human 80210 ARMC9 armadillo repeat containing 9 XM_011511919.2 37.5% 33.2% (many diffs)
28 mouse 78795 Armc9 armadillo repeat containing 9 NM_027456.2 67.8% 71.4% (many diffs)
29 mouse 78795 Armc9 armadillo repeat containing 9 XM_006529960.3 64.4% 67.5% (many diffs)
30 mouse 78795 Armc9 armadillo repeat containing 9 XM_011248111.2 61.1% 60.4% (many diffs)
31 mouse 78795 Armc9 armadillo repeat containing 9 XM_011248112.2 61% 60.2% (many diffs)
32 mouse 78795 Armc9 armadillo repeat containing 9 XM_006529959.3 58.3% 61.4% (many diffs)
33 mouse 78795 Armc9 armadillo repeat containing 9 XR_387202.3 58.2% (many diffs)
34 mouse 78795 Armc9 armadillo repeat containing 9 XM_006529958.3 58.2% 61.3% (many diffs)
35 mouse 78795 Armc9 armadillo repeat containing 9 XM_006529957.3 57.6% 60.7% (many diffs)
36 mouse 78795 Armc9 armadillo repeat containing 9 NM_030184.2 55.2% 58.2% (many diffs)
37 mouse 78795 Armc9 armadillo repeat containing 9 NM_001310702.1 55.2% 58.1% (many diffs)
38 mouse 78795 Armc9 armadillo repeat containing 9 XM_006529956.3 55.1% 58.1% (many diffs)
39 mouse 78795 Armc9 armadillo repeat containing 9 XM_006529953.3 54.7% 57.6% (many diffs)
40 mouse 78795 Armc9 armadillo repeat containing 9 XM_006529952.3 54.6% 57.6% (many diffs)
41 mouse 78795 Armc9 armadillo repeat containing 9 XM_006529954.2 54.5% 57.5% (many diffs)
42 mouse 78795 Armc9 armadillo repeat containing 9 XR_001778466.1 29.1% (many diffs)
43 mouse 78795 Armc9 armadillo repeat containing 9 XR_387200.3 27.3% (many diffs)
44 mouse 78795 Armc9 armadillo repeat containing 9 XR_387199.3 26.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1590
ORF length:
1524
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gcacccctca tttaaagaac tcttccagga ttcctggact ccagagttaa
121agttgaagtt ggaaaagttt ctagctttaa tatctaaagc cagcaacacg ccaaagcttt
181taacaatata taaggagaat ggacaaagta acaaagaaat cttgcagcag ctccaccagc
241agctggttga agctgaacgt aggtcagtga catacctcaa acggtacaat aagatccagg
301ccgactacca caatctcatt ggagtcacag cagagctggt ggattctcta gaggccacag
361tcagcggcaa gatgatcacc cctgagtacc tccagagcgt ctgtgtccgc ctgttcagta
421accagatgcg gcagagcctg gcgcatagtg tggacttcac gaggcctggg acggcatcca
481ccatgttacg agcctccttg gcacccgtga aattgaagga tgtcccatta ctgccctcct
541tggattatga gaaactgaag aaggatttga ttttggggag tgaccgcttg aaagccttct
601tgttgcaggc tctgcgctgg cgcttgacca catcccatcc tggagagcag agggagaccg
661ttctgcaagc ctacatcagc aatgacctct tggactgtta tagccacaac cagaggagtg
721tgcttcagtt gctgcactcc acgagcgacg tggtgcggca gtacatggcc aggctcatca
781atgcttttgc gtcactggca gaaggtcgcc tctaccttgc ccagaacaca aaggtgctgc
841agatgctgga gggaaggctg aaggaggagg acaaggatat catcaccagg gagaatgttc
901ttggggccct gcagaagttc agtctcaggc gcccgctgca gacagcgatg attcaagacg
961gcctcatctt ctggctggtt gatgttctga aggaccctga ctgcctgtct gactacacgc
1021tggagtactc ggtggctttg ctcatgaacc tctgcctccg cagcacaggg aagaacatgt
1081gtgccaaggt ggcaggcctc gtgctcaaag tcctttcgga tcttcttggc catgaaaacc
1141atgagataca gccgtatgtg aatggagctc tgtacagcat cctttctgtt ccatccattc
1201gtgaggaagc aagagcaatg ggaatggaag acatccTACG CTGCTTCATC AAAGAAGGCA
1261ATGCTGAAAT GATCCGCCAG ATAGAATTCA TCATCAAGCA GCTAAATTCC GAAGAGCTAC
1321CAGATGGTGT TCTTGAATCT GATGATGATG AAGATGAAGA TGATGAAGAG GACCATGACA
1381TCATGGAAGC CGATCTGGAC AAAGACGAAC TGATCCAGCC CCAGCTTGGA GAACTCTCAG
1441GAGAGAAGCT TCTGACCACA GAGTACCTGG GGATCATGAC CAACACGGGG AAGACAAGGC
1501GGAAGGGGCT GGCTAATGTG CAGTGGAGCG GGGATGAGCC CCTGCAAAGG CCCGTCACCC
1561CCGGCGGCCA CAGAAACGGG TACCCAGTGT ACCCAACTTT CTTGTACAAA GTGGTTGATA
1621TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1681CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAATCAG
1741TGCCACCCTG GCCTAATTGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1801tgaaagatt

Download FASTA (ORF) (Full)