Construct: ORF TRCN0000475606
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008202.1_s317c1
- Derived from:
- ccsbBroadEn_09894
- DNA Barcode:
- CCGGTTCTGATATGTTTTATAAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD18A (253650)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000475606
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | NM_147195.4 | 99.8% | 99.5% | (many diffs) |
| 2 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | XM_011517839.3 | 99.8% | 99.5% | (many diffs) |
| 3 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | XM_024447482.1 | 93.8% | 93.6% | (many diffs) |
| 4 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | NM_001331100.2 | 93.7% | 93.5% | (many diffs) |
| 5 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | XM_017014576.2 | 93.7% | 93.5% | (many diffs) |
| 6 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | XM_024447481.1 | 88.5% | 88% | (many diffs) |
| 7 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | XM_024447480.1 | 87.9% | 87.4% | (many diffs) |
| 8 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | XM_024447479.1 | 87.8% | 87.4% | (many diffs) |
| 9 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | XM_024447483.1 | 84.6% | 84.1% | (many diffs) |
| 10 | human | 441459 | ANKRD18B | ankyrin repeat domain 18B | NM_001353432.2 | 81.1% | 78% | (many diffs) |
| 11 | human | 101926917 | ANKRD18CP | ankyrin repeat domain 18C, ... | NR_136286.1 | 65.3% | (many diffs) | |
| 12 | human | 253650 | ANKRD18A | ankyrin repeat domain 18A | XM_017014577.1 | 60.1% | 59.2% | (many diffs) |
| 13 | human | 112267916 | LOC112267916 | uncharacterized LOC112267916 | XR_002958867.1 | 24% | (many diffs) | |
| 14 | human | 105379272 | LOC105379272 | uncharacterized LOC105379272 | XR_949087.2 | 20.8% | (many diffs) | |
| 15 | human | 101927345 | LOC101927345 | putative ankyrin repeat dom... | XR_001754943.2 | 17.2% | (many diffs) | |
| 16 | human | 101927345 | LOC101927345 | putative ankyrin repeat dom... | XR_002958650.1 | 15.9% | (many diffs) | |
| 17 | human | 112267916 | LOC112267916 | uncharacterized LOC112267916 | XR_002958868.1 | 13.6% | (many diffs) | |
| 18 | human | 107984150 | LOC107984150 | uncharacterized LOC107984150 | XR_001756161.1 | 11.9% | (many diffs) | |
| 19 | human | 101927345 | LOC101927345 | putative ankyrin repeat dom... | XM_011544009.2 | 10.6% | 8.8% | (many diffs) |
| 20 | human | 101059949 | LOC101059949 | putative ankyrin repeat dom... | XM_017030105.2 | 10.6% | 8.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3045
- ORF length:
- 2976
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaggaagctc ttcagcttcg ggagacgcct gggccaggcg ctcctgagct 121 ccatggacca agagtatgcg ggtccgggtt acgacattcg ggactgggaa ctgcggaaga 181 tccacagggc tgccatcaag ggcgacgccg cggaggtgga gcgctgcctg acgcgcaggt 241 tccgggactt ggacgcccgc gacagaaaag acaggactgt tctacatttg gcctgtgccc 301 atggccgtgt gcaagtggtc actctcttgc tgcacagaag atgccagatc gacatctgtg 361 acagactaaa caggacacct ttaatgaagg ctgtacacag ccaggaagag gcttgtgcca 421 tcgttctcct ggaatgtggc gccaatccaa acattaagga tatctacggc aacactgctc 481 tccattatgc cgtgtataat aaggggactt cactggcaga aagactgctt tcccaccatg 541 caaatattga agcactaaac aaggagggaa acactccact tttgtttgct ataaattcca 601 ggagacagca tatggtggaa tttttattga agaaccaggc aaatatacat gccgttgaca 661 atttcaaaag aacagccctc atacttgcag tacagcataa cttgtcaagt atcgtcaccc 721 tcctgcttca acaaaatata cgtatctctt ctcaagacat gtttggccaa actgccgagg 781 attatgctct ttgttctgat ttgagaagca tccgacaaca aattttggaa cataaaaata 841 aaatgcttaa aaatcatctt cgaaatgaca atcaagaaac agcagctatg aagcctgcaa 901 atttgaaaaa aagaaaagaa cgtgcaaaag cagaacacaa cctaaaagtg gcttcagagg 961 aaaagcaaga aaggctccaa agaagtgaaa ataaacagcc acaggattct caaagttacg 1021 gaaaaaagaa ggatgcgatg tatggaaatt ttatgttgaa gaaagacatt gccatgctca 1081 aagaggaatt atatgcaata aaaaatgaca gtctcagaaa ggaaaagaaa tatattcagg 1141 aaattaaaag cattacagaa ataaatgcta actttgaaaa gagtgtaaga ctcaatgaaa 1201 aaatgataac aaaaacagtg gcccggtatt cgcaacagct taatgatctg aaagctgaga 1261 atgcaaggct gaattcagaa ttggagaagg aaaaacacaa caaagaaaga ctagaagctg 1321 aagttgaatc cctccattct agcctagcca ctgctataaa tgagtacaat gaaattgtgg 1381 aaagaaaaga cctagaacta gttttatgga gagcagatga tgtttctaga catgaaaaaa 1441 tgggttctaa tatttctcaa ctaacagata agaatgagtt gcttactgaa caggtccata 1501 aagctcgggt gaagttcaat accttaaaag gtaagctccg tgagacaaga gatgctctca 1561 gggaaaagac attggcttta ggaagtgtac agctggacct aaggcaagca cagcatcgaa 1621 taaaggaaat gaagcagatg catccaaatg gagaagctaa agaaagtcaa tccattggaa 1681 agcagaactc tttagaggag agaatacgtc aacaagaact tgaaaatctc ttgcttgaac 1741 gacaactaga ggatgctcgt aaggaaggcg ataataaaga gatagtcatt aatatccaca 1801 gagactgtct tgagaatgga aaggaagatc ttctagaaga aagaaataag gaattaatga 1861 aagaatataa ttatttaaaa gaaaaactgc ttcagtgtga aaaagaaaaa gcagaaagag 1921 aagtgattgt gagagaattt caagaagaac tggtcgatca ccttaaaaca ttttcaatat 1981 cagagtctcc actggaaggt acatcacatt gtcatattaa tttgaatgag acatggactt 2041 caaagaagaa attatttcaa gtagaaattc aacctgaaga aaaacatgaa gaattcagaa 2101 aactttttga attaatatca ttactgaact atactgcgga ccaaataaga aagaaaaatc 2161 gtgaattaga agaagaggca actggatata agaaatgcct agaaatgaca ataaatatgt 2221 taaatgcatt tgcaaatgag gacttcaatt gccatggaga cttaaataca gaccaactga 2281 aaatggatat tctgtttaag aagctaaaac agaagtttaa tgatcttgtg gccgagaagg 2341 aagctgtgtc ttcagaatgt gtcaatttgg ccaaagacaa tgaagttctt catcaggagt 2401 tattatctat gagaaatgta caagagaaat gtgaaaaact tgagaaggat aaaaagatgt 2461 tggaagaaga agtattaaat cttaagacac atatggaaaa agatatggta gaacttggta 2521 aactacaaga atataaatcg gagctggatg aaagggcagt gcaggaaata gaaaaattag 2581 aagaaatcca tttacagaaa caagcagaat atgaaaaaca attagagcag ttaaacaagg 2641 ataatacggc ttcactaaaa aagaaggaac tcacacttaa agatgtggaa tgtaaaTTCT 2701 CCAAAATGAA AACTGCTTAT GAAGAGGTTA CAACTGAATT AGAAGAATTT AAGGAAGTCT 2761 TTGCAGCAGC AGTGAAAGCT AACAATTCCA TGTCAAAAAA ATTAATGAAA TCGGATAAGA 2821 AAATAGCAGT GATCAGCACC AAGCTCTTTA CGGAGAAACA GCGGATGAAA TATTTTCTCA 2881 GCACTCTTCC TACAAGGCCA GAACCAGAGT TACCTTGTGT TGAAAATCTT AATAGTATAG 2941 AACTCAACAG AAAATATATT CCCAAAACGG CCATAAGAAT TCCTACTTCA AACCCACAGA 3001 CTTCAAATAA CTGCAAGAAC TTCTTGACTG AGGTTTTGCT ATGTTTGCCA ACTTTCTTGT 3061 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 3121 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 3181 GAAAGGACGA CCGGTTCTGA TATGTTTTAT AAATACGCGT TAAGTCgaca atcaacctct 3241 ggattacaaa atttgtgaaa gatt