Transcript: Human NM_001354819.1

Homo sapiens nuclear receptor subfamily 3 group C member 2 (NR3C2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
NR3C2 (4306)
Length:
5359
CDS:
176..2779

Additional Resources:

NCBI RefSeq record:
NM_001354819.1
NBCI Gene record:
NR3C2 (4306)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001354819.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000336628 CGGATTCCCAGTGGGTATTAA pLKO_005 1636 CDS 100% 15.000 21.000 N NR3C2 n/a
2 TRCN0000025968 GCTCTACTTTACGAAGTGTTT pLKO.1 1932 CDS 100% 4.950 3.960 N Nr3c2 n/a
3 TRCN0000336566 ACACGCCCTTGAGATCATTTA pLKO_005 648 CDS 100% 13.200 9.240 N NR3C2 n/a
4 TRCN0000222172 CCAGCTAAGATTTATCAGAAT pLKO.1 563 CDS 100% 4.950 3.465 N NR3C2 n/a
5 TRCN0000222171 GCTACTAAGCACAATTCCAAA pLKO.1 2452 CDS 100% 4.950 3.465 N NR3C2 n/a
6 TRCN0000222170 CCAGCTTAATATTGTCCAGTA pLKO.1 1345 CDS 100% 4.050 2.835 N NR3C2 n/a
7 TRCN0000336626 CCAGCTTAATATTGTCCAGTA pLKO_005 1345 CDS 100% 4.050 2.835 N NR3C2 n/a
8 TRCN0000222168 CCTTGCCTTCAGCAAGACAAT pLKO.1 389 CDS 100% 0.495 0.347 N NR3C2 n/a
9 TRCN0000336625 CCTTGCCTTCAGCAAGACAAT pLKO_005 389 CDS 100% 0.495 0.347 N NR3C2 n/a
10 TRCN0000336629 TACCCTTGGTTTGCACATAAA pLKO_005 3169 3UTR 100% 0.000 0.000 N NR3C2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001354819.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000487851 GTAACGAGTTACCTGGTTAACTCC pLX_317 9.8% 88.1% 88.1% V5 (not translated due to prior stop codon) 2012_2013ins351 n/a
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