Transcript: Human NM_001365767.2

Homo sapiens L3MBTL histone methyl-lysine binding protein 4 (L3MBTL4), transcript variant 7, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
L3MBTL4 (91133)
Length:
4537
CDS:
202..1806

Additional Resources:

NCBI RefSeq record:
NM_001365767.2
NBCI Gene record:
L3MBTL4 (91133)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001365767.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430371 TATCCGTGGTCCACGTTATTC pLKO_005 1368 CDS 100% 13.200 18.480 N L3MBTL4 n/a
2 TRCN0000015982 CCTCTGTAGTTTGAACTTCAA pLKO.1 1521 CDS 100% 4.950 6.930 N L3MBTL4 n/a
3 TRCN0000015981 GCGAACGAATGACCTGAAGAT pLKO.1 1296 CDS 100% 4.950 6.930 N L3MBTL4 n/a
4 TRCN0000015978 CCAGGTTAATTCGTGTTGCTA pLKO.1 1130 CDS 100% 3.000 4.200 N L3MBTL4 n/a
5 TRCN0000015979 CCATCGGTATTCTGTGTGCTT pLKO.1 493 CDS 100% 2.640 3.696 N L3MBTL4 n/a
6 TRCN0000425909 GCACATCCCTAAGGGTTATAG pLKO_005 648 CDS 100% 13.200 9.240 N L3MBTL4 n/a
7 TRCN0000015980 GCTACGATTGTAGATGTTGAT pLKO.1 1147 CDS 100% 4.950 3.465 N L3MBTL4 n/a
8 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1665 CDS 100% 13.200 6.600 Y LIAS n/a
9 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 1829 3UTR 100% 10.800 5.400 Y SMIM11A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001365767.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14337 pDONR223 100% 99.9% 99.8% None 1597T>C n/a
2 ccsbBroad304_14337 pLX_304 0% 99.9% 99.8% V5 1597T>C n/a
3 TRCN0000465457 ACTCAATCTGAGCTGACAATACGA pLX_317 16.7% 99.9% 99.8% V5 1597T>C n/a
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