Transcript: Human NM_001368813.1

Homo sapiens chromosome 9 open reading frame 129 (C9orf129), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-16
Taxon:
Homo sapiens (human)
Gene:
C9orf129 (445577)
Length:
6504
CDS:
254..622

Additional Resources:

NCBI RefSeq record:
NM_001368813.1
NBCI Gene record:
C9orf129 (445577)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001368813.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1551 3UTR 100% 13.200 6.600 Y LIAS n/a
2 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 5360 3UTR 100% 5.625 2.813 Y KLHL30 n/a
3 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 1718 3UTR 100% 4.950 2.475 Y DCAF11 n/a
4 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 5227 3UTR 100% 2.640 1.320 Y LINC01098 n/a
5 TRCN0000172742 GAGACAGAGTCTTGCTCTGTT pLKO.1 4067 3UTR 100% 0.495 0.248 Y C11orf44 n/a
6 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 5360 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001368813.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07851 pDONR223 100% 10.8% 10.7% None 0_1ins1053;251T>C;366_366delGins1936 n/a
2 ccsbBroad304_07851 pLX_304 0% 10.8% 10.7% V5 0_1ins1053;251T>C;366_366delGins1936 n/a
3 TRCN0000476487 TTGCCACTAGACTTATAACTTATA pLX_317 9.1% 10.8% 10.7% V5 0_1ins1053;251T>C;366_366delGins1936 n/a
4 ccsbBroadEn_02734 pDONR223 100% 10.8% 10.7% None 0_1ins1053;251T>C;366_366delGins1936 n/a
5 ccsbBroad304_02734 pLX_304 0% 10.8% 10.7% V5 0_1ins1053;251T>C;366_366delGins1936 n/a
6 TRCN0000480694 ATACAGGGTGCACGCCTTGCGCGT pLX_317 13.6% 10.8% 10.7% V5 0_1ins1053;251T>C;366_366delGins1936 n/a
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