Construct: ORF TRCN0000480694

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015221.1_s317c1
Derived from:
ccsbBroadEn_02734
DNA Barcode:
ATACAGGGTGCACGCCTTGCGCGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM120A (23196)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480694
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23196 FAM120A family with sequence simila... NM_014612.5 100% 100%
2 human 23196 FAM120A family with sequence simila... NM_001286722.2 99.9% 99.9% 1028_1029insAGC
3 human 23196 FAM120A family with sequence simila... XM_005251842.5 99.9% 99.9% 2802_2803insGGC
4 human 23196 FAM120A family with sequence simila... XM_011518412.2 97.5% 97.4% 1419_1502del
5 human 23196 FAM120A family with sequence simila... XM_011518413.2 97.4% 97.3% 1419_1502del;2886_2887insGGC
6 human 23196 FAM120A family with sequence simila... XM_011518414.3 97.4% 97.3% 1028_1029insAGC;1416_1499del
7 human 23196 FAM120A family with sequence simila... XM_011518416.3 66.8% 66.3% (many diffs)
8 human 23196 FAM120A family with sequence simila... NM_001286723.1 57.8% 56.9% (many diffs)
9 human 23196 FAM120A family with sequence simila... NM_001286724.2 54.2% 52.8% (many diffs)
10 human 445577 C9orf129 chromosome 9 open reading f... NM_001098808.1 14.6% 12.3% (many diffs)
11 human 445577 C9orf129 chromosome 9 open reading f... XM_006717117.4 14.6% 12.3% (many diffs)
12 human 445577 C9orf129 chromosome 9 open reading f... NM_001368813.1 10.8% 10.7% 0_1ins1053;251T>C;366_366delGins1936
13 mouse 218236 Fam120a family with sequence simila... NM_001033268.2 91.4% 96.4% (many diffs)
14 mouse 218236 Fam120a family with sequence simila... XR_001780774.1 69.4% (many diffs)
15 mouse 218236 Fam120a family with sequence simila... XR_001780776.1 64.4% (many diffs)
16 mouse 218236 Fam120a family with sequence simila... XR_001780775.1 58% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3423
ORF length:
3354
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggcgtgcag ggcttccagg actacatcga gaagcactgc ccgagcgccg
121tggtgccggt ggagctgcag aagctggccc ggggcagcct ggtgggcggc gggcggcagc
181ggcccccgca gaccccgctg cgcctgctgg tggacgccga caactgcctg caccgcctct
241acggcggctt ctacaccgac tgggtcagcg gcggccagtg gaaccacatg cttggctacc
301tggcggcgct ggccaaggcc tgcttcggcg gcaacatcga gctcttcgtc ttcttcaacg
361gcgcgctcga gaaggcccgg ctgcacgagt gggtcaagcg gcagggcaac gagcgccaga
421cggcacagca gatcgtcagc catgtccaga acaagggcac cccgccgcca aaggtctggt
481tcctgccgcc cgtctgcatg gcccactgca tccgcctggc gctcatccgc ttccacgtca
541aggttgcaca gagcattgag gatcaccatc aggaagtgat tggtttctgc agagagaatg
601gtttccatgg cttggttgcg tatgactctg attatgcact gtgcaacatc ccctactatt
661tcagtgccca tgccctaaaa ctgagccgga acgggaaaag tctcaccaca agccaatatc
721tgatgcatga agttgccaag caactggacc tgaatccaaa tcgttttcct atttttgctg
781ctctcttagg aaatcacatt ctgcctgatg aagatctggc ttcctttcac tggagtttac
841ttggtccaga acatccacta gcctcactaa aggtccgggc ccaccagctg gtcttgccac
901cttgcgacgt agtgatcaaa gccgttgctg actatgtacg caacattcag gacacctctg
961acttggatgc catagctaaa gatgttttcc agcattcaca gtctagaaca gatgacaaag
1021ttattcgatt taagagagca attggatatt attcagcgac tagtaagcct atgtcatttc
1081atccaccaca ttacttagca gccagacccg gtccgtttgg aatgcctggg atggtgccgc
1141cgcatgttcc tcctcagatg ctcaacattc cgcagacctc tctgcaagca aagcccgtgg
1201ccccacaggt gcccagccca gggggcgccc cgggccaggg tccatacccg tacagcctct
1261ctgagccagc acctctcact ttggacacga gcgggaagaa tctgacggag cagaacagct
1321acagcaacat tcctcacgaa gggaagcaca cgccgctgta tgagcggtcc tcgcccatca
1381acccggccca gagcggcagc cccaaccacg tggattccgc ctacttccct ggctcttcta
1441catcgtcatc ttccgacaac gacgagggca gcggaggggc gacaaaccat atcagcggga
1501acaagattgg ctgggagaag acgggaagcc actcagagcc tcaggcacga ggagacccag
1561gagaccaaac aaaggcagaa ggctcgtcca ctgcctcttc aggaagccaa ctagccgaag
1621gcaagggaag ccagatgggc actgtccagc caatcccgtg cctcctgtcg atgcccacca
1681ggaaccacat ggacatcacc acacctcccc tgccccccgt cgcacctgag gtgctgagag
1741tggccgagca caggcacaag aaggggctga tgtaccccta catcttccat gtcctgacga
1801agggtgaaat caaaattgct gtttctattg aagatgaagc caacaaggac ctgcctccgg
1861ccgctctgct ctataggcca gttcgtcagt atgtttacgg agtcctgttt agtttggcag
1921aaagcagaaa gaaaactgag agacttgctt ttagaaagaa cagacttcca ccagaatttt
1981caccagtgat cattaaagaa tgggcagctt acaaaggaaa gtctcctcaa accccggaac
2041tggttgaagc tcttgccttc agggagtgga cctgccccaa cctgaagagg ctgtggttgg
2101gtaaggcggt agaggacaag aaccgcagga tgagggcctt cctggcctgc atgaggtcgg
2161acaccccagc catgctcaac cctgccaacg tgcccactca cctcatggtg ctctgctgcg
2221tcttacggta catggtgcag tggccgggag cacgcatcct tcggcgtcag gagctagatg
2281ccttcctggc tcaggcgctg tcccccaaac tctacgagcc tgatcagctc caggagctca
2341agattgagaa cctagatccc cgaggaattc agctatcagc tctcttcatg agtggagtag
2401acatggcctt gtttgcaaat gatgcatgcg gacagccaat cccctgggaa cactgttgtc
2461cttggatgta ttttgatggg aagctcttcc aatccaaact cctcaaagcc agccgggaaa
2521agaccccact cattgacctc tgtgatggtc aggctgatca ggctgccaag gtagagaaga
2581tgcgccagag cgtcctcgag gggctcagct tctccaggca gagccacacg ctccctttcc
2641cgccgccacc tgccctgccc ttctaccctg cctctgcgta cccccggcac tttgggcctg
2701tcccaccctc tcagggcagg ggcagaggct ttgcaggcgt ctgtggcttt ggaggcccct
2761atggggaaac ggtagcaaca ggcccttacc gtgccttccg tgtggcggca gcatcgggac
2821actgcggagc cttctcaggc agtgacagca gcaggactag caagtcccag ggcggagtcc
2881aacctatacc ttctcaggga ggcaaactag aaatagctgg cactgtggtt ggccattggg
2941ctgggagcag gcggggccgt gggggccggg ggCCTTTCCC CCTGCAGGTG GTTTCTGTCG
3001GAGGACCAGC TAGAGGGCGT CCAAGAGGAG TTATTTCCAC CCCAGTGATT AGAACATTTG
3061GAAGAGGTGG AAGGTACTAT GGCAGAGGTT ACAAAAACCA GGCAGCAATT CAGGGCAGAC
3121CTCCTTATGC TGCTTCAGCA GAAGAAGTGG CCAAAGAACT TAAGTCAAAA TCTGGGGAAT
3181CGAAGTCCTC TGCTATGTCT TCAGACGGGT CCCTGGCTGA AAACGGAGTG ATGGCCGAGG
3241AGAAGCCGGC TCCCCAGATG AACGGGAGCA CGGGTGACGC CAGGGCCCCC AGCCACTCTG
3301AAAGTGCCTT GAATAATGAC TCTAAAACGT GCAATACAAA TCCTCATTTA AATGCACTAA
3361GTACAGACAG CGCTTGCCGC AGAGAAGCTG CTCTGGAGGC AGCTGTCTTA AATAAAGAAG
3421AGTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
3481TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
3541GGCTTTATAT ATCTTGTGGA AAGGACGAAT ACAGGGTGCA CGCCTTGCGC GTACGCGTTA
3601AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)