Transcript: Human NM_001370261.1

Homo sapiens menin 1 (MEN1), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
MEN1 (4221)
Length:
2960
CDS:
308..2140

Additional Resources:

NCBI RefSeq record:
NM_001370261.1
NBCI Gene record:
MEN1 (4221)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001370261.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000040141 GCTGCGATTCTACGACGGCAT pLKO.1 1546 CDS 100% 0.720 1.008 N MEN1 n/a
2 TRCN0000009849 GAATTCCATATCTTGCGAATC pLKO.1 2603 3UTR 100% 0.000 0.000 N MEN1 n/a
3 TRCN0000040138 CCGAGTACAGTCTGTATCAAA pLKO.1 2271 3UTR 100% 5.625 4.500 N MEN1 n/a
4 TRCN0000338276 CCTCACGCTGGGTCCTAATTA pLKO_005 2384 3UTR 100% 15.000 10.500 N MEN1 n/a
5 TRCN0000338330 CCTCAGCCAAGACCTACTATC pLKO_005 1227 CDS 100% 10.800 7.560 N MEN1 n/a
6 TRCN0000338331 CTGTACCTGAAAGGATCATAC pLKO_005 968 CDS 100% 10.800 7.560 N MEN1 n/a
7 TRCN0000338278 TCTACGACGGCATCTGCAAAT pLKO_005 1554 CDS 100% 10.800 7.560 N MEN1 n/a
8 TRCN0000040139 GCTGTACCTGAAAGGATCATA pLKO.1 967 CDS 100% 5.625 3.938 N MEN1 n/a
9 TRCN0000010378 CAAGATGGAGGTGGCGTTCAT pLKO.1 1003 CDS 100% 4.950 3.465 N MEN1 n/a
10 TRCN0000338275 CAAGATGGAGGTGGCGTTCAT pLKO_005 1003 CDS 100% 4.950 3.465 N MEN1 n/a
11 TRCN0000010377 GAAGAAGGTCTCCGATGTCAT pLKO.1 661 CDS 100% 4.950 3.465 N MEN1 n/a
12 TRCN0000040142 GAGTTCTTTGAAGTAGCCAAT pLKO.1 1394 CDS 100% 4.050 2.835 N MEN1 n/a
13 TRCN0000040140 GTGCAGATGAAGAAGCAGAAA pLKO.1 2060 CDS 100% 4.950 2.970 N MEN1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001370261.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10964 pDONR223 100% 94.2% 94.2% None 548_652del;1254C>T n/a
2 ccsbBroad304_10964 pLX_304 0% 94.2% 94.2% V5 548_652del;1254C>T n/a
3 TRCN0000471053 CCTGGATTATATCCTACGGAACCA pLX_317 21.8% 94.2% 94.2% V5 548_652del;1254C>T n/a
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