Transcript: Human NM_001424.6

Homo sapiens epithelial membrane protein 2 (EMP2), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
EMP2 (2013)
Length:
5097
CDS:
111..614

Additional Resources:

NCBI RefSeq record:
NM_001424.6
NBCI Gene record:
EMP2 (2013)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001424.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000322843 CGAATTGCACAGTCATCAATG pLKO_005 247 CDS 100% 10.800 15.120 N EMP2 n/a
2 TRCN0000072383 GCAAACGTATTGTTTCCTTTA pLKO.1 706 3UTR 100% 10.800 15.120 N EMP2 n/a
3 TRCN0000072385 CACGAATTGCACAGTCATCAA pLKO.1 245 CDS 100% 4.950 6.930 N EMP2 n/a
4 TRCN0000072384 GCGTGAAGACATTCACGACAA pLKO.1 467 CDS 100% 0.405 0.567 N EMP2 n/a
5 TRCN0000322844 AGACTATGAAGGCTGGTATTC pLKO_005 822 3UTR 100% 10.800 8.640 N EMP2 n/a
6 TRCN0000322911 GATACTGAGGAAGCGCAAATA pLKO_005 593 CDS 100% 13.200 9.240 N EMP2 n/a
7 TRCN0000322910 ACCTCCATCATCCAGCTAATG pLKO_005 402 CDS 100% 10.800 7.560 N EMP2 n/a
8 TRCN0000322842 CAGACAGGCGTGAAGACATTC pLKO_005 460 CDS 100% 10.800 7.560 N EMP2 n/a
9 TRCN0000187890 GCAGATGTCTGGAGAATATGT pLKO.1 216 CDS 100% 5.625 3.938 N LOC391359 n/a
10 TRCN0000072386 CAACACGAATTGCACAGTCAT pLKO.1 242 CDS 100% 4.950 3.465 N EMP2 n/a
11 TRCN0000072387 GTTTGTCCTAACCTCCATCAT pLKO.1 392 CDS 100% 4.950 3.465 N EMP2 n/a
12 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 2267 3UTR 100% 4.950 2.475 Y CFLAR n/a
13 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 2267 3UTR 100% 4.950 2.475 Y C19orf31 n/a
14 TRCN0000162795 CTTCCAAAGTGCTGGGATTAT pLKO.1 3826 3UTR 100% 13.200 6.600 Y SLC48A1 n/a
15 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 2265 3UTR 100% 4.950 2.475 Y ERN2 n/a
16 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 2265 3UTR 100% 4.950 2.475 Y P3H4 n/a
17 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 2265 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001424.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.