Transcript: Human NM_001828.6

Homo sapiens Charcot-Leyden crystal galectin (CLC), mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
CLC (1178)
Length:
631
CDS:
78..506

Additional Resources:

NCBI RefSeq record:
NM_001828.6
NBCI Gene record:
CLC (1178)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001828.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049028 GCCAGATAAGTACCAGGTAAT pLKO.1 365 CDS 100% 10.800 15.120 N CLC n/a
2 TRCN0000049030 CTTACACCTTTGACCATAGAA pLKO.1 403 CDS 100% 5.625 3.938 N CLC n/a
3 TRCN0000421273 AGGATGGCCAAGAATTTGAAC pLKO_005 328 CDS 100% 4.950 3.465 N CLC n/a
4 TRCN0000049029 CTACTGGTTCTACTGTGACAA pLKO.1 121 CDS 100% 4.950 3.465 N CLC n/a
5 TRCN0000412653 GAATCCAAGAATATGCCCTTT pLKO_005 306 CDS 100% 4.050 2.835 N CLC n/a
6 TRCN0000433166 GAGGAATCAGACATTGTCTTC pLKO_005 213 CDS 100% 4.050 2.835 N CLC n/a
7 TRCN0000049032 CCCTGACCAAATTTAATGTCA pLKO.1 469 CDS 100% 3.000 2.100 N CLC n/a
8 TRCN0000049031 CCTGTTTCTTGAATGAACCAT pLKO.1 160 CDS 100% 3.000 2.100 N CLC n/a
9 TRCN0000438428 CAAGTGTGCTTTGGTCGTCGT pLKO_005 240 CDS 100% 2.160 1.512 N CLC n/a
10 TRCN0000438309 CAAGCCTGAGGCTGTGAAGAT pLKO_005 425 CDS 100% 4.950 2.970 N CLC n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001828.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06009 pDONR223 100% 99.5% 99.2% None 83C>T;240T>C n/a
2 ccsbBroad304_06009 pLX_304 0% 99.5% 99.2% V5 83C>T;240T>C n/a
3 TRCN0000472751 TACTGCAGCCGATCCTTATAGGAA pLX_317 100% 99.5% 99.2% V5 83C>T;240T>C n/a
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