Transcript: Human NM_001985.3

Homo sapiens electron transfer flavoprotein subunit beta (ETFB), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
ETFB (2109)
Length:
872
CDS:
63..830

Additional Resources:

NCBI RefSeq record:
NM_001985.3
NBCI Gene record:
ETFB (2109)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001985.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000064432 TGGTGTGAAGCACTCCATGAA pLKO.1 158 CDS 100% 4.950 6.930 N ETFB n/a
2 TRCN0000291142 TGGTGTGAAGCACTCCATGAA pLKO_005 158 CDS 100% 4.950 6.930 N ETFB n/a
3 TRCN0000064431 AGGCCATCGATGATGACTGTA pLKO.1 436 CDS 100% 4.950 3.465 N ETFB n/a
4 TRCN0000064429 GCCCAACATCATGAAAGCCAA pLKO.1 647 CDS 100% 2.640 1.848 N ETFB n/a
5 TRCN0000291085 GCCCAACATCATGAAAGCCAA pLKO_005 647 CDS 100% 2.640 1.848 N ETFB n/a
6 TRCN0000064428 CGCCGTGAAGATCCGAGTGAA pLKO.1 110 CDS 100% 1.650 1.155 N ETFB n/a
7 TRCN0000291083 CGCCGTGAAGATCCGAGTGAA pLKO_005 110 CDS 100% 1.650 1.155 N ETFB n/a
8 TRCN0000064430 CAAGGAGAAGAAGCTGGTGAA pLKO.1 218 CDS 100% 4.050 2.430 N ETFB n/a
9 TRCN0000291084 CAAGGAGAAGAAGCTGGTGAA pLKO_005 218 CDS 100% 4.050 2.430 N ETFB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001985.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00519 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00519 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000476333 AATCATCTTCAATAAGTCTGTACC pLX_317 41.3% 100% 100% V5 n/a
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